Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001117annotation not available (604 aa)    
Predicted Functional Partners:
ENSODEP00000016752
annotation not available
    
 0.947
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
    
 
 0.888
AP1B1
Adaptor related protein complex 1 subunit beta 1.
    
 0.883
PIK3C2A
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha.
    
 0.878
ENSODEP00000008282
annotation not available
    
 0.870
AP2A1
Adaptor related protein complex 2 subunit alpha 1.
    
 0.868
BMP2K
BMP2 inducible kinase.
    
 0.857
CLTC
Clathrin heavy chain.
   
 0.849
CLTCL1
Clathrin heavy chain like 1.
   
 0.849
AP1G1
Adaptor related protein complex 1 subunit gamma 1.
   
 0.847
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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