ENSODEP00000001131 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001131

annotation not available (67 aa)

Predicted Functional Partners:

ENSODEP00000015551

0.982

TRA2A

0.964

SRSF4

0.929

TRA2B

0.917

ENSODEP00000004007

0.917

ENSODEP00000004119

0.917

ENSODEP00000007830

0.917

ENSODEP00000014053

0.917

ENSODEP00000016216

0.917

ENSODEP00000022499

0.907

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001131	ENSODEP00000004007	ENSODEP00000001131	ENSODEP00000004007	annotation not available	annotation not available	0.917
ENSODEP00000001131	ENSODEP00000004119	ENSODEP00000001131	ENSODEP00000004119	annotation not available	annotation not available	0.917
ENSODEP00000001131	ENSODEP00000007830	ENSODEP00000001131	ENSODEP00000007830	annotation not available	annotation not available	0.917
ENSODEP00000001131	ENSODEP00000014053	ENSODEP00000001131	ENSODEP00000014053	annotation not available	annotation not available	0.917
ENSODEP00000001131	ENSODEP00000015551	ENSODEP00000001131	ENSODEP00000015551	annotation not available	annotation not available	0.982
ENSODEP00000001131	ENSODEP00000016216	ENSODEP00000001131	ENSODEP00000016216	annotation not available	annotation not available	0.917
ENSODEP00000001131	ENSODEP00000022499	ENSODEP00000001131	ENSODEP00000022499	annotation not available	annotation not available	0.907
ENSODEP00000001131	SRSF4	ENSODEP00000001131	ENSODEP00000004237	annotation not available	Serine and arginine rich splicing factor 4.	0.929
ENSODEP00000001131	TRA2A	ENSODEP00000001131	ENSODEP00000011205	annotation not available	Transformer 2 alpha homolog.	0.964
ENSODEP00000001131	TRA2B	ENSODEP00000001131	ENSODEP00000001728	annotation not available	Transformer 2 beta homolog.	0.917
ENSODEP00000004007	ENSODEP00000001131	ENSODEP00000004007	ENSODEP00000001131	annotation not available	annotation not available	0.917
ENSODEP00000004007	ENSODEP00000015551	ENSODEP00000004007	ENSODEP00000015551	annotation not available	annotation not available	0.993
ENSODEP00000004007	ENSODEP00000022499	ENSODEP00000004007	ENSODEP00000022499	annotation not available	annotation not available	0.965
ENSODEP00000004007	SRSF4	ENSODEP00000004007	ENSODEP00000004237	annotation not available	Serine and arginine rich splicing factor 4.	0.951
ENSODEP00000004007	TRA2A	ENSODEP00000004007	ENSODEP00000011205	annotation not available	Transformer 2 alpha homolog.	0.992
ENSODEP00000004119	ENSODEP00000001131	ENSODEP00000004119	ENSODEP00000001131	annotation not available	annotation not available	0.917
ENSODEP00000004119	ENSODEP00000015551	ENSODEP00000004119	ENSODEP00000015551	annotation not available	annotation not available	0.993
ENSODEP00000004119	ENSODEP00000022499	ENSODEP00000004119	ENSODEP00000022499	annotation not available	annotation not available	0.965
ENSODEP00000004119	SRSF4	ENSODEP00000004119	ENSODEP00000004237	annotation not available	Serine and arginine rich splicing factor 4.	0.951
ENSODEP00000004119	TRA2A	ENSODEP00000004119	ENSODEP00000011205	annotation not available	Transformer 2 alpha homolog.	0.992