ENSODEP00000001133 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSODEP00000001133

annotation not available (54 aa)

Predicted Functional Partners:

PHF12

0.979

SIN3B

0.957

EMSY

0.957

Hdac2

0.892

ENSODEP00000017303

0.892

ENSODEP00000017600

0.892

ENSODEP00000004935

0.869

ENSODEP00000004979

0.869

ENSODEP00000006880

0.869

SIN3A

0.869

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EMSY	ENSODEP00000001133	ENSODEP00000004891	ENSODEP00000001133	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.957
EMSY	ENSODEP00000004935	ENSODEP00000004891	ENSODEP00000004935	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.845
EMSY	ENSODEP00000004979	ENSODEP00000004891	ENSODEP00000004979	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.845
EMSY	ENSODEP00000006880	ENSODEP00000004891	ENSODEP00000006880	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.845
EMSY	ENSODEP00000017303	ENSODEP00000004891	ENSODEP00000017303	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.762
EMSY	ENSODEP00000017600	ENSODEP00000004891	ENSODEP00000017600	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.762
EMSY	Hdac2	ENSODEP00000004891	ENSODEP00000001037	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.762
EMSY	PHF12	ENSODEP00000004891	ENSODEP00000014083	EMSY transcriptional repressor, BRCA2 interacting.	PHD finger protein 12.	0.977
EMSY	SIN3A	ENSODEP00000004891	ENSODEP00000020215	EMSY transcriptional repressor, BRCA2 interacting.	SIN3 transcription regulator family member A.	0.920
EMSY	SIN3B	ENSODEP00000004891	ENSODEP00000002266	EMSY transcriptional repressor, BRCA2 interacting.	SIN3 transcription regulator family member B.	0.972
ENSODEP00000001133	EMSY	ENSODEP00000001133	ENSODEP00000004891	annotation not available	EMSY transcriptional repressor, BRCA2 interacting.	0.957
ENSODEP00000001133	ENSODEP00000004935	ENSODEP00000001133	ENSODEP00000004935	annotation not available	annotation not available	0.869
ENSODEP00000001133	ENSODEP00000004979	ENSODEP00000001133	ENSODEP00000004979	annotation not available	annotation not available	0.869
ENSODEP00000001133	ENSODEP00000006880	ENSODEP00000001133	ENSODEP00000006880	annotation not available	annotation not available	0.869
ENSODEP00000001133	ENSODEP00000017303	ENSODEP00000001133	ENSODEP00000017303	annotation not available	annotation not available	0.892
ENSODEP00000001133	ENSODEP00000017600	ENSODEP00000001133	ENSODEP00000017600	annotation not available	annotation not available	0.892
ENSODEP00000001133	Hdac2	ENSODEP00000001133	ENSODEP00000001037	annotation not available	annotation not available	0.892
ENSODEP00000001133	PHF12	ENSODEP00000001133	ENSODEP00000014083	annotation not available	PHD finger protein 12.	0.979
ENSODEP00000001133	SIN3A	ENSODEP00000001133	ENSODEP00000020215	annotation not available	SIN3 transcription regulator family member A.	0.869
ENSODEP00000001133	SIN3B	ENSODEP00000001133	ENSODEP00000002266	annotation not available	SIN3 transcription regulator family member B.	0.957