RASSF6 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RASSF6

Ras association domain family member 6. (335 aa)

Predicted Functional Partners:

STK3

0.998

STK4

0.994

ENSODEP00000000483

0.827

ENSODEP00000005328

0.827

ENSODEP00000008889

0.827

ENSODEP00000011536

0.827

KDM3A

0.811

SAV1

0.783

MDM4

0.769

FBXW11

0.728

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000483	FBXW11	ENSODEP00000000483	ENSODEP00000002249	annotation not available	F-box and WD repeat domain containing 11.	0.897
ENSODEP00000000483	MDM4	ENSODEP00000000483	ENSODEP00000018320	annotation not available	MDM4 regulator of p53.	0.988
ENSODEP00000000483	RASSF6	ENSODEP00000000483	ENSODEP00000001137	annotation not available	Ras association domain family member 6.	0.827
ENSODEP00000005328	FBXW11	ENSODEP00000005328	ENSODEP00000002249	annotation not available	F-box and WD repeat domain containing 11.	0.897
ENSODEP00000005328	MDM4	ENSODEP00000005328	ENSODEP00000018320	annotation not available	MDM4 regulator of p53.	0.988
ENSODEP00000005328	RASSF6	ENSODEP00000005328	ENSODEP00000001137	annotation not available	Ras association domain family member 6.	0.827
ENSODEP00000008889	FBXW11	ENSODEP00000008889	ENSODEP00000002249	annotation not available	F-box and WD repeat domain containing 11.	0.897
ENSODEP00000008889	MDM4	ENSODEP00000008889	ENSODEP00000018320	annotation not available	MDM4 regulator of p53.	0.988
ENSODEP00000008889	RASSF6	ENSODEP00000008889	ENSODEP00000001137	annotation not available	Ras association domain family member 6.	0.827
ENSODEP00000011536	FBXW11	ENSODEP00000011536	ENSODEP00000002249	annotation not available	F-box and WD repeat domain containing 11.	0.897
ENSODEP00000011536	MDM4	ENSODEP00000011536	ENSODEP00000018320	annotation not available	MDM4 regulator of p53.	0.988
ENSODEP00000011536	RASSF6	ENSODEP00000011536	ENSODEP00000001137	annotation not available	Ras association domain family member 6.	0.827
FBXW11	ENSODEP00000000483	ENSODEP00000002249	ENSODEP00000000483	F-box and WD repeat domain containing 11.	annotation not available	0.897
FBXW11	ENSODEP00000005328	ENSODEP00000002249	ENSODEP00000005328	F-box and WD repeat domain containing 11.	annotation not available	0.897
FBXW11	ENSODEP00000008889	ENSODEP00000002249	ENSODEP00000008889	F-box and WD repeat domain containing 11.	annotation not available	0.897
FBXW11	ENSODEP00000011536	ENSODEP00000002249	ENSODEP00000011536	F-box and WD repeat domain containing 11.	annotation not available	0.897
FBXW11	MDM4	ENSODEP00000002249	ENSODEP00000018320	F-box and WD repeat domain containing 11.	MDM4 regulator of p53.	0.764
FBXW11	RASSF6	ENSODEP00000002249	ENSODEP00000001137	F-box and WD repeat domain containing 11.	Ras association domain family member 6.	0.728
FBXW11	STK3	ENSODEP00000002249	ENSODEP00000005437	F-box and WD repeat domain containing 11.	Serine/threonine kinase 3.	0.704
FBXW11	STK4	ENSODEP00000002249	ENSODEP00000021445	F-box and WD repeat domain containing 11.	Serine/threonine kinase 4.	0.775