ANKRD50 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

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Coexpression

Experiments

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[Homology]

Score

ANKRD50

Ankyrin repeat domain 50. (990 aa)

Predicted Functional Partners:

ENSODEP00000013816

0.886

ENSODEP00000014761

0.886

ENSODEP00000003204

0.875

ENSODEP00000004977

0.875

ARL13B

0.844

TRAF7

0.814

ENSODEP00000015638

0.800

PPP6R2

0.800

PPP6R3

0.800

ENSODEP00000008350

0.778

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD50	ARL13B	ENSODEP00000001138	ENSODEP00000015427	Ankyrin repeat domain 50.	ADP ribosylation factor like GTPase 13B.	0.844
ANKRD50	ENSODEP00000003204	ENSODEP00000001138	ENSODEP00000003204	Ankyrin repeat domain 50.	annotation not available	0.875
ANKRD50	ENSODEP00000004977	ENSODEP00000001138	ENSODEP00000004977	Ankyrin repeat domain 50.	annotation not available	0.875
ANKRD50	ENSODEP00000008350	ENSODEP00000001138	ENSODEP00000008350	Ankyrin repeat domain 50.	annotation not available	0.778
ANKRD50	ENSODEP00000013816	ENSODEP00000001138	ENSODEP00000013816	Ankyrin repeat domain 50.	annotation not available	0.886
ANKRD50	ENSODEP00000014761	ENSODEP00000001138	ENSODEP00000014761	Ankyrin repeat domain 50.	annotation not available	0.886
ANKRD50	ENSODEP00000015638	ENSODEP00000001138	ENSODEP00000015638	Ankyrin repeat domain 50.	annotation not available	0.800
ANKRD50	PPP6R2	ENSODEP00000001138	ENSODEP00000021543	Ankyrin repeat domain 50.	Protein phosphatase 6 regulatory subunit 2.	0.800
ANKRD50	PPP6R3	ENSODEP00000001138	ENSODEP00000023642	Ankyrin repeat domain 50.	Protein phosphatase 6 regulatory subunit 3.	0.800
ANKRD50	TRAF7	ENSODEP00000001138	ENSODEP00000018251	Ankyrin repeat domain 50.	TNF receptor associated factor 7.	0.814
ARL13B	ANKRD50	ENSODEP00000015427	ENSODEP00000001138	ADP ribosylation factor like GTPase 13B.	Ankyrin repeat domain 50.	0.844
ARL13B	ENSODEP00000008350	ENSODEP00000015427	ENSODEP00000008350	ADP ribosylation factor like GTPase 13B.	annotation not available	0.635
ARL13B	ENSODEP00000013816	ENSODEP00000015427	ENSODEP00000013816	ADP ribosylation factor like GTPase 13B.	annotation not available	0.613
ARL13B	ENSODEP00000014761	ENSODEP00000015427	ENSODEP00000014761	ADP ribosylation factor like GTPase 13B.	annotation not available	0.613
ENSODEP00000003204	ANKRD50	ENSODEP00000003204	ENSODEP00000001138	annotation not available	Ankyrin repeat domain 50.	0.875
ENSODEP00000003204	ENSODEP00000015638	ENSODEP00000003204	ENSODEP00000015638	annotation not available	annotation not available	0.989
ENSODEP00000003204	PPP6R2	ENSODEP00000003204	ENSODEP00000021543	annotation not available	Protein phosphatase 6 regulatory subunit 2.	0.973
ENSODEP00000003204	PPP6R3	ENSODEP00000003204	ENSODEP00000023642	annotation not available	Protein phosphatase 6 regulatory subunit 3.	0.973
ENSODEP00000004977	ANKRD50	ENSODEP00000004977	ENSODEP00000001138	annotation not available	Ankyrin repeat domain 50.	0.875
ENSODEP00000004977	ENSODEP00000015638	ENSODEP00000004977	ENSODEP00000015638	annotation not available	annotation not available	0.989