STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX16Sorting nexin 16. (343 aa)    
Predicted Functional Partners:
KIFAP3
Kinesin associated protein 3.
     
 0.795
STX16
Syntaxin 16.
     
 0.773
STX5
Syntaxin 5.
     
 0.772
STX8
Syntaxin 8.
    
 0.768
STX6
Syntaxin 6.
    
 0.768
USE1
Unconventional SNARE in the ER 1.
     
 0.762
ENSODEP00000008167
annotation not available
     
 0.762
KIF13A
Kinesin family member 13A.
     
 0.717
KIF13B
Kinesin family member 13B.
     
 0.717
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.716
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.