STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001142annotation not available (402 aa)    
Predicted Functional Partners:
ENSODEP00000025023
annotation not available
    
 
 0.877
MRPL20
Mitochondrial ribosomal protein L20.
    
 
 0.863
NFYB
Nuclear transcription factor Y subunit beta.
   
    0.850
ENSODEP00000017080
annotation not available
   
    0.850
MRPL19
Mitochondrial ribosomal protein L19.
   
 
 0.848
FASTKD2
FAST kinase domains 2.
   
 
 0.843
MRPS9
Mitochondrial ribosomal protein S9.
   
   0.823
PDCD11
Programmed cell death 11.
    
   0.820
MRPL17
Mitochondrial ribosomal protein L17.
    
   0.820
MRPL9
Mitochondrial ribosomal protein L9.
    
   0.820
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.