ENSODEP00000001142 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

ENSODEP00000001142

annotation not available (402 aa)

Predicted Functional Partners:

FASTKD2

0.932

TRUB2

0.831

STX5

0.768

ENSODEP00000025023

0.723

SUCLG1

0.715

DDX47

0.715

ENSODEP00000007386

0.706

ENSODEP00000019140

0.706

ENSODEP00000014319

0.705

ENSODEP00000026953

0.705

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX47	ENSODEP00000001142	ENSODEP00000017487	ENSODEP00000001142	DEAD-box helicase 47.	annotation not available	0.715
DDX47	FASTKD2	ENSODEP00000017487	ENSODEP00000013357	DEAD-box helicase 47.	FAST kinase domains 2.	0.903
DDX47	TRUB2	ENSODEP00000017487	ENSODEP00000023610	DEAD-box helicase 47.	TruB pseudouridine synthase family member 2.	0.870
ENSODEP00000001142	DDX47	ENSODEP00000001142	ENSODEP00000017487	annotation not available	DEAD-box helicase 47.	0.715
ENSODEP00000001142	ENSODEP00000007386	ENSODEP00000001142	ENSODEP00000007386	annotation not available	annotation not available	0.706
ENSODEP00000001142	ENSODEP00000014319	ENSODEP00000001142	ENSODEP00000014319	annotation not available	annotation not available	0.705
ENSODEP00000001142	ENSODEP00000019140	ENSODEP00000001142	ENSODEP00000019140	annotation not available	annotation not available	0.706
ENSODEP00000001142	ENSODEP00000025023	ENSODEP00000001142	ENSODEP00000025023	annotation not available	annotation not available	0.723
ENSODEP00000001142	ENSODEP00000026953	ENSODEP00000001142	ENSODEP00000026953	annotation not available	annotation not available	0.705
ENSODEP00000001142	FASTKD2	ENSODEP00000001142	ENSODEP00000013357	annotation not available	FAST kinase domains 2.	0.932
ENSODEP00000001142	STX5	ENSODEP00000001142	ENSODEP00000004149	annotation not available	Syntaxin 5.	0.768
ENSODEP00000001142	SUCLG1	ENSODEP00000001142	ENSODEP00000002861	annotation not available	succinate-CoA ligase alpha subunit.	0.715
ENSODEP00000001142	TRUB2	ENSODEP00000001142	ENSODEP00000023610	annotation not available	TruB pseudouridine synthase family member 2.	0.831
ENSODEP00000007386	ENSODEP00000001142	ENSODEP00000007386	ENSODEP00000001142	annotation not available	annotation not available	0.706
ENSODEP00000007386	ENSODEP00000014319	ENSODEP00000007386	ENSODEP00000014319	annotation not available	annotation not available	0.982
ENSODEP00000007386	ENSODEP00000026953	ENSODEP00000007386	ENSODEP00000026953	annotation not available	annotation not available	0.982
ENSODEP00000007386	STX5	ENSODEP00000007386	ENSODEP00000004149	annotation not available	Syntaxin 5.	0.993
ENSODEP00000014319	ENSODEP00000001142	ENSODEP00000014319	ENSODEP00000001142	annotation not available	annotation not available	0.705
ENSODEP00000014319	ENSODEP00000007386	ENSODEP00000014319	ENSODEP00000007386	annotation not available	annotation not available	0.982
ENSODEP00000014319	ENSODEP00000019140	ENSODEP00000014319	ENSODEP00000019140	annotation not available	annotation not available	0.982