STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001147annotation not available (428 aa)    
Predicted Functional Partners:
MFAP1
Microfibril associated protein 1.
   
 0.994
ENSODEP00000004018
annotation not available
   
 0.992
ENSODEP00000005097
annotation not available
   
 0.992
PRPF8
pre-mRNA processing factor 8.
    
 0.992
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.991
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.989
SF3B3
Splicing factor 3b subunit 3.
   
 0.988
ZMAT2
Zinc finger matrin-type 2.
    
 0.987
PRPF6
pre-mRNA processing factor 6.
    
 0.986
ENSODEP00000018621
annotation not available
    
 0.986
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.