STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD17Ankyrin repeat domain 17. (2584 aa)    
Predicted Functional Partners:
FGF8
Fibroblast growth factor 8.
    
   0.914
USP34
Ubiquitin specific peptidase 34.
   
 0.895
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.845
RC3H1
Ring finger and CCCH-type domains 1.
    
 
 0.825
ENSODEP00000016760
annotation not available
   
 
 0.820
ENSODEP00000017360
annotation not available
   
 
 0.820
ENSODEP00000017537
annotation not available
   
 
 0.820
HOXC4
Homeobox C4.
    
   0.818
Pdcd2l
Programmed cell death 2 like.
    
 
 0.817
TRAF7
TNF receptor associated factor 7.
    
 0.814
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.