Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC170Coiled-coil domain containing 170. (724 aa)    
Predicted Functional Partners:
DMAP1
DNA methyltransferase 1 associated protein 1.
   
 0.939
RUVBL1
RuvB like AAA ATPase 1.
    
 0.938
MRGBP
MRG domain binding protein.
    
 0.936
TRRAP
Transformation/transcription domain associated protein.
   
 0.933
ENSODEP00000014748
annotation not available
    
 0.904
ENSODEP00000025322
annotation not available
    
 0.904
ENSODEP00000016929
annotation not available
    
 0.884
ENSODEP00000023398
annotation not available
    
 0.884
LOC101561105
annotation not available
    
 0.884
ZNHIT1
Zinc finger HIT-type containing 1.
    
 
 0.869
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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