ENSODEP00000001167 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001167

annotation not available (118 aa)

Predicted Functional Partners:

STX5

0.999

ENSODEP00000008167

0.999

SCFD1

0.998

ENSODEP00000014319

0.993

ENSODEP00000026953

0.993

ENSODEP00000002206

0.992

ENSODEP00000008684

0.992

USO1

0.992

NAPA

0.990

ENSODEP00000007386

0.983

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001167	ENSODEP00000002206	ENSODEP00000001167	ENSODEP00000002206	annotation not available	annotation not available	0.992
ENSODEP00000001167	ENSODEP00000007386	ENSODEP00000001167	ENSODEP00000007386	annotation not available	annotation not available	0.983
ENSODEP00000001167	ENSODEP00000008167	ENSODEP00000001167	ENSODEP00000008167	annotation not available	annotation not available	0.999
ENSODEP00000001167	ENSODEP00000008684	ENSODEP00000001167	ENSODEP00000008684	annotation not available	annotation not available	0.992
ENSODEP00000001167	ENSODEP00000014319	ENSODEP00000001167	ENSODEP00000014319	annotation not available	annotation not available	0.993
ENSODEP00000001167	ENSODEP00000026953	ENSODEP00000001167	ENSODEP00000026953	annotation not available	annotation not available	0.993
ENSODEP00000001167	NAPA	ENSODEP00000001167	ENSODEP00000011440	annotation not available	NSF attachment protein alpha.	0.990
ENSODEP00000001167	SCFD1	ENSODEP00000001167	ENSODEP00000006194	annotation not available	Sec1 family domain containing 1.	0.998
ENSODEP00000001167	STX5	ENSODEP00000001167	ENSODEP00000004149	annotation not available	Syntaxin 5.	0.999
ENSODEP00000001167	USO1	ENSODEP00000001167	ENSODEP00000009564	annotation not available	USO1 vesicle transport factor.	0.992
ENSODEP00000002206	ENSODEP00000001167	ENSODEP00000002206	ENSODEP00000001167	annotation not available	annotation not available	0.992
ENSODEP00000002206	ENSODEP00000007386	ENSODEP00000002206	ENSODEP00000007386	annotation not available	annotation not available	0.947
ENSODEP00000002206	ENSODEP00000008167	ENSODEP00000002206	ENSODEP00000008167	annotation not available	annotation not available	0.996
ENSODEP00000002206	ENSODEP00000014319	ENSODEP00000002206	ENSODEP00000014319	annotation not available	annotation not available	0.923
ENSODEP00000002206	ENSODEP00000026953	ENSODEP00000002206	ENSODEP00000026953	annotation not available	annotation not available	0.923
ENSODEP00000002206	NAPA	ENSODEP00000002206	ENSODEP00000011440	annotation not available	NSF attachment protein alpha.	0.983
ENSODEP00000002206	SCFD1	ENSODEP00000002206	ENSODEP00000006194	annotation not available	Sec1 family domain containing 1.	0.987
ENSODEP00000002206	STX5	ENSODEP00000002206	ENSODEP00000004149	annotation not available	Syntaxin 5.	0.996
ENSODEP00000002206	USO1	ENSODEP00000002206	ENSODEP00000009564	annotation not available	USO1 vesicle transport factor.	0.930
ENSODEP00000007386	ENSODEP00000001167	ENSODEP00000007386	ENSODEP00000001167	annotation not available	annotation not available	0.983