Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DBX1Developing brain homeobox 1. (343 aa)    
Predicted Functional Partners:
LMO3
LIM domain only 3.
    
 
 0.690
LHX6
LIM homeobox 6.
    
 
 0.673
HOXA2
Homeobox A2.
    
 
 0.663
IRX3
Iroquois homeobox 3.
    
 
 0.653
ENSODEP00000025035
annotation not available
   
  0.640
LMX1B
LIM homeobox transcription factor 1 beta.
    
 
 0.633
LMX1A
LIM homeobox transcription factor 1 alpha.
    
 
 0.633
ISL2
ISL LIM homeobox 2.
    
 
 0.632
LMO1
LIM domain only 1.
    
 
 0.625
EVX1
Even-skipped homeobox 1.
   
 
 0.621
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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