MYO10 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MYO10

Myosin X. (1994 aa)

Predicted Functional Partners:

DCC

0.975

ACTG2

0.948

NEO1

0.947

USH1C

0.912

ENSODEP00000024513

0.899

ENSODEP00000024569

0.899

USH1G

0.890

ANKS4B

0.890

ENSODEP00000003330

0.876

ENSODEP00000009689

0.876

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTG2	ENSODEP00000003330	ENSODEP00000013983	ENSODEP00000003330	Actin gamma 2, smooth muscle.	annotation not available	0.833
ACTG2	ENSODEP00000009689	ENSODEP00000013983	ENSODEP00000009689	Actin gamma 2, smooth muscle.	annotation not available	0.833
ACTG2	MYO10	ENSODEP00000013983	ENSODEP00000001183	Actin gamma 2, smooth muscle.	Myosin X.	0.948
ANKS4B	ENSODEP00000024513	ENSODEP00000014976	ENSODEP00000024513	Ankyrin repeat and sterile alpha motif domain containing 4B.	annotation not available	0.685
ANKS4B	ENSODEP00000024569	ENSODEP00000014976	ENSODEP00000024569	Ankyrin repeat and sterile alpha motif domain containing 4B.	annotation not available	0.685
ANKS4B	MYO10	ENSODEP00000014976	ENSODEP00000001183	Ankyrin repeat and sterile alpha motif domain containing 4B.	Myosin X.	0.890
ANKS4B	USH1C	ENSODEP00000014976	ENSODEP00000012362	Ankyrin repeat and sterile alpha motif domain containing 4B.	USH1 protein network component harmonin.	0.990
DCC	MYO10	ENSODEP00000025264	ENSODEP00000001183	DCC netrin 1 receptor.	Myosin X.	0.975
ENSODEP00000003330	ACTG2	ENSODEP00000003330	ENSODEP00000013983	annotation not available	Actin gamma 2, smooth muscle.	0.833
ENSODEP00000003330	ENSODEP00000009689	ENSODEP00000003330	ENSODEP00000009689	annotation not available	annotation not available	0.544
ENSODEP00000003330	MYO10	ENSODEP00000003330	ENSODEP00000001183	annotation not available	Myosin X.	0.876
ENSODEP00000009689	ACTG2	ENSODEP00000009689	ENSODEP00000013983	annotation not available	Actin gamma 2, smooth muscle.	0.833
ENSODEP00000009689	ENSODEP00000003330	ENSODEP00000009689	ENSODEP00000003330	annotation not available	annotation not available	0.544
ENSODEP00000009689	MYO10	ENSODEP00000009689	ENSODEP00000001183	annotation not available	Myosin X.	0.876
ENSODEP00000024513	ANKS4B	ENSODEP00000024513	ENSODEP00000014976	annotation not available	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.685
ENSODEP00000024513	ENSODEP00000024569	ENSODEP00000024513	ENSODEP00000024569	annotation not available	annotation not available	0.900
ENSODEP00000024513	MYO10	ENSODEP00000024513	ENSODEP00000001183	annotation not available	Myosin X.	0.899
ENSODEP00000024513	USH1C	ENSODEP00000024513	ENSODEP00000012362	annotation not available	USH1 protein network component harmonin.	0.778
ENSODEP00000024513	USH1G	ENSODEP00000024513	ENSODEP00000012756	annotation not available	USH1 protein network component sans.	0.736
ENSODEP00000024569	ANKS4B	ENSODEP00000024569	ENSODEP00000014976	annotation not available	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.685