ENSODEP00000001189 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

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[Homology]

Score

ENSODEP00000001189

annotation not available (449 aa)

Predicted Functional Partners:

SF3A1

0.995

ENSODEP00000018621

0.990

SNRPA1

0.988

SF3B2

0.966

SNRPB2

0.964

SF3B3

0.964

ENSODEP00000016889

0.953

ENSODEP00000017795

0.953

SF3B5

0.952

ENSODEP00000006068

0.947

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001189	ENSODEP00000006068	ENSODEP00000001189	ENSODEP00000006068	annotation not available	annotation not available	0.947
ENSODEP00000001189	ENSODEP00000016889	ENSODEP00000001189	ENSODEP00000016889	annotation not available	annotation not available	0.953
ENSODEP00000001189	ENSODEP00000017795	ENSODEP00000001189	ENSODEP00000017795	annotation not available	annotation not available	0.953
ENSODEP00000001189	ENSODEP00000018621	ENSODEP00000001189	ENSODEP00000018621	annotation not available	annotation not available	0.990
ENSODEP00000001189	SF3A1	ENSODEP00000001189	ENSODEP00000003338	annotation not available	Splicing factor 3a subunit 1.	0.995
ENSODEP00000001189	SF3B2	ENSODEP00000001189	ENSODEP00000024278	annotation not available	Splicing factor 3b subunit 2.	0.966
ENSODEP00000001189	SF3B3	ENSODEP00000001189	ENSODEP00000019189	annotation not available	Splicing factor 3b subunit 3.	0.964
ENSODEP00000001189	SF3B5	ENSODEP00000001189	ENSODEP00000026130	annotation not available	Splicing factor 3b subunit 5.	0.952
ENSODEP00000001189	SNRPA1	ENSODEP00000001189	ENSODEP00000019117	annotation not available	Small nuclear ribonucleoprotein polypeptide A.	0.988
ENSODEP00000001189	SNRPB2	ENSODEP00000001189	ENSODEP00000016555	annotation not available	Small nuclear ribonucleoprotein polypeptide B2.	0.964
ENSODEP00000006068	ENSODEP00000001189	ENSODEP00000006068	ENSODEP00000001189	annotation not available	annotation not available	0.947
ENSODEP00000006068	ENSODEP00000016889	ENSODEP00000006068	ENSODEP00000016889	annotation not available	annotation not available	0.981
ENSODEP00000006068	ENSODEP00000017795	ENSODEP00000006068	ENSODEP00000017795	annotation not available	annotation not available	0.981
ENSODEP00000006068	ENSODEP00000018621	ENSODEP00000006068	ENSODEP00000018621	annotation not available	annotation not available	0.982
ENSODEP00000006068	SF3A1	ENSODEP00000006068	ENSODEP00000003338	annotation not available	Splicing factor 3a subunit 1.	0.991
ENSODEP00000006068	SF3B2	ENSODEP00000006068	ENSODEP00000024278	annotation not available	Splicing factor 3b subunit 2.	0.996
ENSODEP00000006068	SF3B3	ENSODEP00000006068	ENSODEP00000019189	annotation not available	Splicing factor 3b subunit 3.	0.996
ENSODEP00000006068	SF3B5	ENSODEP00000006068	ENSODEP00000026130	annotation not available	Splicing factor 3b subunit 5.	0.990
ENSODEP00000006068	SNRPA1	ENSODEP00000006068	ENSODEP00000019117	annotation not available	Small nuclear ribonucleoprotein polypeptide A.	0.978
ENSODEP00000006068	SNRPB2	ENSODEP00000006068	ENSODEP00000016555	annotation not available	Small nuclear ribonucleoprotein polypeptide B2.	0.963