ENSODEP00000001190 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001190

annotation not available (70 aa)

Predicted Functional Partners:

ENSODEP00000000099

0.992

ENSODEP00000018854

0.989

ENSODEP00000021380

0.989

Fau

0.989

ENSODEP00000007747

0.979

RPL27

0.979

ENSODEP00000025678

0.979

ENSODEP00000026096

0.979

ENSODEP00000000038

0.978

RPL15

0.978

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000038	ENSODEP00000000099	ENSODEP00000000038	ENSODEP00000000099	annotation not available	annotation not available	0.993
ENSODEP00000000038	ENSODEP00000001190	ENSODEP00000000038	ENSODEP00000001190	annotation not available	annotation not available	0.978
ENSODEP00000000038	ENSODEP00000007747	ENSODEP00000000038	ENSODEP00000007747	annotation not available	annotation not available	0.978
ENSODEP00000000038	ENSODEP00000018854	ENSODEP00000000038	ENSODEP00000018854	annotation not available	annotation not available	0.988
ENSODEP00000000038	ENSODEP00000021380	ENSODEP00000000038	ENSODEP00000021380	annotation not available	annotation not available	0.988
ENSODEP00000000038	ENSODEP00000025678	ENSODEP00000000038	ENSODEP00000025678	annotation not available	annotation not available	0.978
ENSODEP00000000038	ENSODEP00000026096	ENSODEP00000000038	ENSODEP00000026096	annotation not available	annotation not available	0.978
ENSODEP00000000038	Fau	ENSODEP00000000038	ENSODEP00000024490	annotation not available	annotation not available	0.988
ENSODEP00000000038	RPL15	ENSODEP00000000038	ENSODEP00000003749	annotation not available	Ribosomal protein L15.	0.981
ENSODEP00000000038	RPL27	ENSODEP00000000038	ENSODEP00000024715	annotation not available	Ribosomal protein L27.	0.978
ENSODEP00000000099	ENSODEP00000000038	ENSODEP00000000099	ENSODEP00000000038	annotation not available	annotation not available	0.993
ENSODEP00000000099	ENSODEP00000001190	ENSODEP00000000099	ENSODEP00000001190	annotation not available	annotation not available	0.992
ENSODEP00000000099	ENSODEP00000007747	ENSODEP00000000099	ENSODEP00000007747	annotation not available	annotation not available	0.993
ENSODEP00000000099	ENSODEP00000018854	ENSODEP00000000099	ENSODEP00000018854	annotation not available	annotation not available	0.998
ENSODEP00000000099	ENSODEP00000021380	ENSODEP00000000099	ENSODEP00000021380	annotation not available	annotation not available	0.998
ENSODEP00000000099	ENSODEP00000025678	ENSODEP00000000099	ENSODEP00000025678	annotation not available	annotation not available	0.993
ENSODEP00000000099	ENSODEP00000026096	ENSODEP00000000099	ENSODEP00000026096	annotation not available	annotation not available	0.993
ENSODEP00000000099	Fau	ENSODEP00000000099	ENSODEP00000024490	annotation not available	annotation not available	0.998
ENSODEP00000000099	RPL15	ENSODEP00000000099	ENSODEP00000003749	annotation not available	Ribosomal protein L15.	0.997
ENSODEP00000000099	RPL27	ENSODEP00000000099	ENSODEP00000024715	annotation not available	Ribosomal protein L27.	0.993