ENSODEP00000001198 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSODEP00000001198

annotation not available (205 aa)

Predicted Functional Partners:

ENSODEP00000003271

0.840

ENSODEP00000005452

0.840

GDI1

0.840

ENSODEP00000010922

0.840

ENSODEP00000012184

0.840

RAB3GAP1

0.829

RAB2B

0.825

RAB3GAP2

0.803

ENSODEP00000015228

0.779

ENSODEP00000019545

0.779

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001198	ENSODEP00000003271	ENSODEP00000001198	ENSODEP00000003271	annotation not available	annotation not available	0.840
ENSODEP00000001198	ENSODEP00000005452	ENSODEP00000001198	ENSODEP00000005452	annotation not available	annotation not available	0.840
ENSODEP00000001198	ENSODEP00000010922	ENSODEP00000001198	ENSODEP00000010922	annotation not available	annotation not available	0.840
ENSODEP00000001198	ENSODEP00000012184	ENSODEP00000001198	ENSODEP00000012184	annotation not available	annotation not available	0.840
ENSODEP00000001198	ENSODEP00000015228	ENSODEP00000001198	ENSODEP00000015228	annotation not available	annotation not available	0.779
ENSODEP00000001198	ENSODEP00000019545	ENSODEP00000001198	ENSODEP00000019545	annotation not available	annotation not available	0.779
ENSODEP00000001198	GDI1	ENSODEP00000001198	ENSODEP00000008760	annotation not available	GDP dissociation inhibitor 1.	0.840
ENSODEP00000001198	RAB2B	ENSODEP00000001198	ENSODEP00000001698	annotation not available	RAB2B, member RAS oncogene family.	0.825
ENSODEP00000001198	RAB3GAP1	ENSODEP00000001198	ENSODEP00000012286	annotation not available	RAB3 GTPase activating protein catalytic subunit 1.	0.829
ENSODEP00000001198	RAB3GAP2	ENSODEP00000001198	ENSODEP00000021453	annotation not available	RAB3 GTPase activating non-catalytic protein subunit 2.	0.803
ENSODEP00000003271	ENSODEP00000001198	ENSODEP00000003271	ENSODEP00000001198	annotation not available	annotation not available	0.840
ENSODEP00000003271	ENSODEP00000015228	ENSODEP00000003271	ENSODEP00000015228	annotation not available	annotation not available	0.922
ENSODEP00000003271	ENSODEP00000019545	ENSODEP00000003271	ENSODEP00000019545	annotation not available	annotation not available	0.922
ENSODEP00000003271	RAB2B	ENSODEP00000003271	ENSODEP00000001698	annotation not available	RAB2B, member RAS oncogene family.	0.735
ENSODEP00000003271	RAB3GAP1	ENSODEP00000003271	ENSODEP00000012286	annotation not available	RAB3 GTPase activating protein catalytic subunit 1.	0.693
ENSODEP00000003271	RAB3GAP2	ENSODEP00000003271	ENSODEP00000021453	annotation not available	RAB3 GTPase activating non-catalytic protein subunit 2.	0.753
ENSODEP00000005452	ENSODEP00000001198	ENSODEP00000005452	ENSODEP00000001198	annotation not available	annotation not available	0.840
ENSODEP00000005452	ENSODEP00000015228	ENSODEP00000005452	ENSODEP00000015228	annotation not available	annotation not available	0.922
ENSODEP00000005452	ENSODEP00000019545	ENSODEP00000005452	ENSODEP00000019545	annotation not available	annotation not available	0.922
ENSODEP00000005452	RAB2B	ENSODEP00000005452	ENSODEP00000001698	annotation not available	RAB2B, member RAS oncogene family.	0.735