STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001199annotation not available (157 aa)    
Predicted Functional Partners:
SFI1
SFI1 centrin binding protein.
    
 0.945
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.944
ENSODEP00000005545
annotation not available
    
 0.915
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.902
POC5
POC5 centriolar protein.
    
 
 0.896
XPA
XPA, DNA damage recognition and repair factor.
    
 0.895
ENSODEP00000001663
annotation not available
    
 0.893
ENSODEP00000008486
annotation not available
    
 0.893
ENSODEP00000010963
annotation not available
    
 0.893
ENSODEP00000025357
annotation not available
    
 0.893
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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