STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001201annotation not available (496 aa)    
Predicted Functional Partners:
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.994
BUD13
BUD13 homolog.
    
 0.993
RBMX2
RNA binding motif protein X-linked 2.
   
 0.992
ENSODEP00000018621
annotation not available
    
 0.992
SF3A1
Splicing factor 3a subunit 1.
   
 0.991
SNIP1
Smad nuclear interacting protein 1.
    
 0.991
PRPF8
pre-mRNA processing factor 8.
   
 0.991
SF3B3
Splicing factor 3b subunit 3.
   
 0.991
SF3B2
Splicing factor 3b subunit 2.
    
 0.991
SNRPD1
Small nuclear ribonucleoprotein Sm D1.
   
 0.990
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.