Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001205annotation not available (79 aa)    
Predicted Functional Partners:
CBX2
Chromobox 2.
    
 0.989
CBX8
Chromobox 8.
    
 0.987
CBX4
Chromobox 4.
    
 0.986
ENSODEP00000016790
annotation not available
    
 0.972
ENSODEP00000005907
annotation not available
 
  
 0.965
RNF2
Ring finger protein 2.
    
 0.964
CBX7
Chromobox 7.
    
 0.963
SCMH1
Scm polycomb group protein homolog 1.
    
 0.956
RING1
Ring finger protein 1.
    
 0.948
ENSODEP00000004585
annotation not available
    
 0.943
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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