Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCO2Beta-carotene oxygenase 2. (535 aa)    
Predicted Functional Partners:
LRAT
Lecithin retinol acyltransferase.
     
 0.902
RDH10
Retinol dehydrogenase 10.
     
 0.874
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
    
 0.838
ENSODEP00000006486
annotation not available
     
 0.831
RDH8
Retinol dehydrogenase 8.
   
 
 0.825
DHRS3
Dehydrogenase/reductase 3.
     
 0.824
RDH14
Retinol dehydrogenase 14.
     
 0.823
RDH13
Retinol dehydrogenase 13.
     
 0.823
RDH12
Retinol dehydrogenase 12.
     
 0.823
ENSODEP00000017698
annotation not available
     
 0.823
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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