ENSODEP00000001209 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSODEP00000001209

annotation not available (422 aa)

Predicted Functional Partners:

PLA2G4A

0.773

OR51D1

0.754

ENSODEP00000004733

0.751

UBE2V1

0.751

ENSODEP00000011413

0.751

ENSODEP00000026050

0.751

ENSODEP00000020897

0.733

SERPINA10

0.732

LRG1

0.669

COL2A1

0.647

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COL2A1	ENSODEP00000001209	ENSODEP00000005590	ENSODEP00000001209	Collagen type II alpha 1 chain.	annotation not available	0.647
COL2A1	ENSODEP00000020897	ENSODEP00000005590	ENSODEP00000020897	Collagen type II alpha 1 chain.	annotation not available	0.966
COL2A1	PLA2G4A	ENSODEP00000005590	ENSODEP00000000832	Collagen type II alpha 1 chain.	Phospholipase A2 group IVA.	0.664
ENSODEP00000001209	COL2A1	ENSODEP00000001209	ENSODEP00000005590	annotation not available	Collagen type II alpha 1 chain.	0.647
ENSODEP00000001209	ENSODEP00000004733	ENSODEP00000001209	ENSODEP00000004733	annotation not available	annotation not available	0.751
ENSODEP00000001209	ENSODEP00000011413	ENSODEP00000001209	ENSODEP00000011413	annotation not available	annotation not available	0.751
ENSODEP00000001209	ENSODEP00000020897	ENSODEP00000001209	ENSODEP00000020897	annotation not available	annotation not available	0.733
ENSODEP00000001209	ENSODEP00000026050	ENSODEP00000001209	ENSODEP00000026050	annotation not available	annotation not available	0.751
ENSODEP00000001209	LRG1	ENSODEP00000001209	ENSODEP00000000236	annotation not available	Leucine rich alpha-2-glycoprotein 1.	0.669
ENSODEP00000001209	OR51D1	ENSODEP00000001209	ENSODEP00000026148	annotation not available	Olfactory receptor family 51 subfamily D member 1.	0.754
ENSODEP00000001209	PLA2G4A	ENSODEP00000001209	ENSODEP00000000832	annotation not available	Phospholipase A2 group IVA.	0.773
ENSODEP00000001209	SERPINA10	ENSODEP00000001209	ENSODEP00000011523	annotation not available	Serpin family A member 10.	0.732
ENSODEP00000001209	UBE2V1	ENSODEP00000001209	ENSODEP00000008860	annotation not available	Ubiquitin conjugating enzyme E2 V1.	0.751
ENSODEP00000004733	ENSODEP00000001209	ENSODEP00000004733	ENSODEP00000001209	annotation not available	annotation not available	0.751
ENSODEP00000004733	ENSODEP00000011413	ENSODEP00000004733	ENSODEP00000011413	annotation not available	annotation not available	0.971
ENSODEP00000004733	ENSODEP00000026050	ENSODEP00000004733	ENSODEP00000026050	annotation not available	annotation not available	0.971
ENSODEP00000004733	PLA2G4A	ENSODEP00000004733	ENSODEP00000000832	annotation not available	Phospholipase A2 group IVA.	0.930
ENSODEP00000004733	UBE2V1	ENSODEP00000004733	ENSODEP00000008860	annotation not available	Ubiquitin conjugating enzyme E2 V1.	0.971
ENSODEP00000011413	ENSODEP00000001209	ENSODEP00000011413	ENSODEP00000001209	annotation not available	annotation not available	0.751
ENSODEP00000011413	ENSODEP00000004733	ENSODEP00000011413	ENSODEP00000004733	annotation not available	annotation not available	0.971