Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001213annotation not available (198 aa)    
Predicted Functional Partners:
XPO1
Exportin 1.
   
 0.981
RANGAP1
Ran GTPase activating protein 1.
   
 0.968
RCC1
Regulator of chromosome condensation 1.
   
 0.966
KPNB1
Karyopherin subunit beta 1.
   
 0.964
XPOT
Exportin for tRNA.
   
 0.933
XPO5
Exportin 5.
    
 0.930
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.927
ENSODEP00000004060
annotation not available
   
 0.917
ENSODEP00000005601
annotation not available
   
 0.917
ENSODEP00000011880
annotation not available
   
 0.917
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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