STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL28A1Collagen type XXVIII alpha 1 chain. (1107 aa)    
Predicted Functional Partners:
TAC1
Tachykinin precursor 1.
     
  0.860
P3H1
Prolyl 3-hydroxylase 1.
     
 0.803
COL6A2
Collagen type VI alpha 2 chain.
    
 0.786
COL26A1
Collagen type XXVI alpha 1 chain.
    
 0.773
PPIB
Peptidylprolyl isomerase B.
    
 0.763
P4HB
Prolyl 4-hydroxylase subunit beta.
    
 0.743
P3H2
Prolyl 3-hydroxylase 2.
     
 0.735
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.720
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 0.719
SERPINH1
Serpin family H member 1.
    
 0.716
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.