STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VOPP1VOPP1 WW domain binding protein. (169 aa)    
Predicted Functional Partners:
WWOX
WW domain containing oxidoreductase.
    
 
 0.841
CYYR1
Cysteine and tyrosine rich 1.
      
 0.766
TMEM207
Transmembrane protein 207.
      
 0.745
Guca1a
annotation not available
      
 0.702
SHISA3
Shisa family member 3.
      
 0.622
C7orf25
Chromosome 7 open reading frame 25.
      
 0.622
LANCL2
LanC like 2.
      
 0.620
SHISAL1
Shisa like 1.
      
 0.588
ENSODEP00000008215
annotation not available
      
 0.581
C7orf26
Chromosome 7 open reading frame 26.
      
 0.581
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.