STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTRF1LMitochondrial translational release factor 1 like. (317 aa)    
Predicted Functional Partners:
HEMK1
HemK methyltransferase family member 1.
  
 
 0.955
CDC23
Cell division cycle 23.
  
 0.930
N6AMT1
N-6 adenine-specific DNA methyltransferase 1.
  
 
 0.924
BTRC
Beta-transducin repeat containing E3 ubiquitin protein ligase.
    
 0.920
CDC16
Cell division cycle 16.
    
 0.916
ANAPC2
Anaphase promoting complex subunit 2.
    
  0.916
ENSODEP00000009318
annotation not available
   
  0.913
CDC26
Cell division cycle 26.
    
  0.912
ANAPC5
Anaphase promoting complex subunit 5.
    
 0.911
CDC20
Cell division cycle 20.
   
 0.904
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.