STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NUDT6Nudix hydrolase 6. (283 aa)    
Predicted Functional Partners:
BOLA3
bolA family member 3.
    
   0.928
NUDT5
Nudix hydrolase 5.
     
 0.920
NUDT12
Nudix hydrolase 12.
     
 0.896
NADK
NAD kinase.
    
  0.852
ITPA
Inosine triphosphatase.
     
 0.844
NUDT13
Nudix hydrolase 13.
     
 0.843
QPRT
Quinolinate phosphoribosyltransferase.
     
 0.804
ENSODEP00000023932
annotation not available
     
 0.801
SIRT4
Sirtuin 4.
     
  0.800
GCH1
GTP cyclohydrolase 1.
     
  0.800
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.