STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001241annotation not available (465 aa)    
Predicted Functional Partners:
TRMT10A
tRNA methyltransferase 10A.
   
 0.922
ENSODEP00000013125
annotation not available
    
 0.838
ENSODEP00000014424
annotation not available
    
 0.838
ENSODEP00000014459
annotation not available
    
 0.838
ENSODEP00000026339
annotation not available
    
 0.838
ENSODEP00000027024
annotation not available
    
 0.838
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
  
  
 0.818
NDUFAF6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
  
  
 0.725
PDCD11
Programmed cell death 11.
  
    0.725
ENSODEP00000003518
annotation not available
   
 
 0.723
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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