OSTN protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OSTN

Osteocrin. (112 aa)

Predicted Functional Partners:

ENSODEP00000003790

0.705

ENSODEP00000004589

0.705

ENSODEP00000006323

0.705

Pcnp

0.705

ENSODEP00000015260

0.705

ENSODEP00000015500

0.705

ENSODEP00000025392

0.705

ENSODEP00000025613

0.705

ENSODEP00000001258

0.698

ENSODEP00000001355

0.698

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001258	OSTN	ENSODEP00000001258	ENSODEP00000001242	annotation not available	Osteocrin.	0.698
ENSODEP00000001355	OSTN	ENSODEP00000001355	ENSODEP00000001242	annotation not available	Osteocrin.	0.698
ENSODEP00000003790	OSTN	ENSODEP00000003790	ENSODEP00000001242	annotation not available	Osteocrin.	0.705
ENSODEP00000004589	OSTN	ENSODEP00000004589	ENSODEP00000001242	annotation not available	Osteocrin.	0.705
ENSODEP00000006323	OSTN	ENSODEP00000006323	ENSODEP00000001242	annotation not available	Osteocrin.	0.705
ENSODEP00000015260	OSTN	ENSODEP00000015260	ENSODEP00000001242	annotation not available	Osteocrin.	0.705
ENSODEP00000015500	OSTN	ENSODEP00000015500	ENSODEP00000001242	annotation not available	Osteocrin.	0.705
ENSODEP00000025392	OSTN	ENSODEP00000025392	ENSODEP00000001242	annotation not available	Osteocrin.	0.705
ENSODEP00000025613	OSTN	ENSODEP00000025613	ENSODEP00000001242	annotation not available	Osteocrin.	0.705
OSTN	ENSODEP00000001258	ENSODEP00000001242	ENSODEP00000001258	Osteocrin.	annotation not available	0.698
OSTN	ENSODEP00000001355	ENSODEP00000001242	ENSODEP00000001355	Osteocrin.	annotation not available	0.698
OSTN	ENSODEP00000003790	ENSODEP00000001242	ENSODEP00000003790	Osteocrin.	annotation not available	0.705
OSTN	ENSODEP00000004589	ENSODEP00000001242	ENSODEP00000004589	Osteocrin.	annotation not available	0.705
OSTN	ENSODEP00000006323	ENSODEP00000001242	ENSODEP00000006323	Osteocrin.	annotation not available	0.705
OSTN	ENSODEP00000015260	ENSODEP00000001242	ENSODEP00000015260	Osteocrin.	annotation not available	0.705
OSTN	ENSODEP00000015500	ENSODEP00000001242	ENSODEP00000015500	Osteocrin.	annotation not available	0.705
OSTN	ENSODEP00000025392	ENSODEP00000001242	ENSODEP00000025392	Osteocrin.	annotation not available	0.705
OSTN	ENSODEP00000025613	ENSODEP00000001242	ENSODEP00000025613	Osteocrin.	annotation not available	0.705
OSTN	Pcnp	ENSODEP00000001242	ENSODEP00000006986	Osteocrin.	annotation not available	0.705
Pcnp	OSTN	ENSODEP00000006986	ENSODEP00000001242	annotation not available	Osteocrin.	0.705