FOXJ2 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FOXJ2

Forkhead box J2. (563 aa)

Predicted Functional Partners:

PAX6

0.914

RFX1

0.913

NF1

0.890

ASXL2

0.854

FOXG1

0.817

SUOX

0.795

SGK3

0.769

SRF

0.768

ENSODEP00000017540

0.763

CREBBP

0.757

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASXL2	FOXG1	ENSODEP00000012997	ENSODEP00000006817	ASXL transcriptional regulator 2.	Forkhead box G1.	0.709
ASXL2	FOXJ2	ENSODEP00000012997	ENSODEP00000001243	ASXL transcriptional regulator 2.	Forkhead box J2.	0.854
CREBBP	ENSODEP00000017540	ENSODEP00000019124	ENSODEP00000017540	CREB binding protein.	annotation not available	0.999
CREBBP	FOXG1	ENSODEP00000019124	ENSODEP00000006817	CREB binding protein.	Forkhead box G1.	0.777
CREBBP	FOXJ2	ENSODEP00000019124	ENSODEP00000001243	CREB binding protein.	Forkhead box J2.	0.757
CREBBP	NF1	ENSODEP00000019124	ENSODEP00000016237	CREB binding protein.	Neurofibromin 1.	0.422
CREBBP	PAX6	ENSODEP00000019124	ENSODEP00000021806	CREB binding protein.	Paired box 6.	0.816
CREBBP	SRF	ENSODEP00000019124	ENSODEP00000021973	CREB binding protein.	Serum response factor.	0.827
ENSODEP00000017540	CREBBP	ENSODEP00000017540	ENSODEP00000019124	annotation not available	CREB binding protein.	0.999
ENSODEP00000017540	FOXG1	ENSODEP00000017540	ENSODEP00000006817	annotation not available	Forkhead box G1.	0.777
ENSODEP00000017540	FOXJ2	ENSODEP00000017540	ENSODEP00000001243	annotation not available	Forkhead box J2.	0.763
ENSODEP00000017540	PAX6	ENSODEP00000017540	ENSODEP00000021806	annotation not available	Paired box 6.	0.857
ENSODEP00000017540	SRF	ENSODEP00000017540	ENSODEP00000021973	annotation not available	Serum response factor.	0.749
FOXG1	ASXL2	ENSODEP00000006817	ENSODEP00000012997	Forkhead box G1.	ASXL transcriptional regulator 2.	0.709
FOXG1	CREBBP	ENSODEP00000006817	ENSODEP00000019124	Forkhead box G1.	CREB binding protein.	0.777
FOXG1	ENSODEP00000017540	ENSODEP00000006817	ENSODEP00000017540	Forkhead box G1.	annotation not available	0.777
FOXG1	FOXJ2	ENSODEP00000006817	ENSODEP00000001243	Forkhead box G1.	Forkhead box J2.	0.817
FOXG1	PAX6	ENSODEP00000006817	ENSODEP00000021806	Forkhead box G1.	Paired box 6.	0.885
FOXG1	SGK3	ENSODEP00000006817	ENSODEP00000003866	Forkhead box G1.	Serum/glucocorticoid regulated kinase family member 3.	0.769
FOXG1	SRF	ENSODEP00000006817	ENSODEP00000021973	Forkhead box G1.	Serum response factor.	0.841