Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001247annotation not available (100 aa)    
Predicted Functional Partners:
WASHC4
WASH complex subunit 4.
   
 0.972
WASHC5
WASH complex subunit 5.
   
 0.971
WASHC3
WASH complex subunit 3.
    
 0.971
ENSODEP00000017018
annotation not available
    
 0.969
SNX27
Sorting nexin 27.
    
 0.953
CAPZB
Capping actin protein of muscle Z-line subunit beta.
    
 0.916
FKBP15
FKBP prolyl isomerase 15.
   
 
 0.882
ENSODEP00000013816
annotation not available
    
 
 0.876
ENSODEP00000014761
annotation not available
    
 
 0.876
Smc5
annotation not available
   
 
 0.872
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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