ENSODEP00000001256 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001256

annotation not available (213 aa)

Predicted Functional Partners:

CASP8

0.955

VAPA

0.933

VAPB

0.931

BCAP31

0.929

SEC63

0.861

ENSODEP00000000147

0.834

ENSODEP00000002323

0.834

ENSODEP00000015721

0.834

ENSODEP00000025151

0.834

ENSODEP00000026353

0.834

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCAP31	CASP8	ENSODEP00000004164	ENSODEP00000012216	B cell receptor associated protein 31.	Caspase 8.	0.993
BCAP31	ENSODEP00000000147	ENSODEP00000004164	ENSODEP00000000147	B cell receptor associated protein 31.	annotation not available	0.834
BCAP31	ENSODEP00000001256	ENSODEP00000004164	ENSODEP00000001256	B cell receptor associated protein 31.	annotation not available	0.929
BCAP31	ENSODEP00000002323	ENSODEP00000004164	ENSODEP00000002323	B cell receptor associated protein 31.	annotation not available	0.834
BCAP31	ENSODEP00000015721	ENSODEP00000004164	ENSODEP00000015721	B cell receptor associated protein 31.	annotation not available	0.834
BCAP31	ENSODEP00000025151	ENSODEP00000004164	ENSODEP00000025151	B cell receptor associated protein 31.	annotation not available	0.834
BCAP31	ENSODEP00000026353	ENSODEP00000004164	ENSODEP00000026353	B cell receptor associated protein 31.	annotation not available	0.834
BCAP31	SEC63	ENSODEP00000004164	ENSODEP00000017317	B cell receptor associated protein 31.	SEC63 homolog, protein translocation regulator.	0.861
BCAP31	VAPA	ENSODEP00000004164	ENSODEP00000001350	B cell receptor associated protein 31.	VAMP associated protein A.	0.957
BCAP31	VAPB	ENSODEP00000004164	ENSODEP00000000041	B cell receptor associated protein 31.	VAMP associated protein B and C.	0.949
CASP8	BCAP31	ENSODEP00000012216	ENSODEP00000004164	Caspase 8.	B cell receptor associated protein 31.	0.993
CASP8	ENSODEP00000001256	ENSODEP00000012216	ENSODEP00000001256	Caspase 8.	annotation not available	0.955
ENSODEP00000000147	BCAP31	ENSODEP00000000147	ENSODEP00000004164	annotation not available	B cell receptor associated protein 31.	0.834
ENSODEP00000000147	ENSODEP00000001256	ENSODEP00000000147	ENSODEP00000001256	annotation not available	annotation not available	0.834
ENSODEP00000000147	SEC63	ENSODEP00000000147	ENSODEP00000017317	annotation not available	SEC63 homolog, protein translocation regulator.	0.822
ENSODEP00000000147	VAPA	ENSODEP00000000147	ENSODEP00000001350	annotation not available	VAMP associated protein A.	0.526
ENSODEP00000001256	BCAP31	ENSODEP00000001256	ENSODEP00000004164	annotation not available	B cell receptor associated protein 31.	0.929
ENSODEP00000001256	CASP8	ENSODEP00000001256	ENSODEP00000012216	annotation not available	Caspase 8.	0.955
ENSODEP00000001256	ENSODEP00000000147	ENSODEP00000001256	ENSODEP00000000147	annotation not available	annotation not available	0.834
ENSODEP00000001256	ENSODEP00000002323	ENSODEP00000001256	ENSODEP00000002323	annotation not available	annotation not available	0.834