ENSODEP00000001258 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

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[Homology]

Score

ENSODEP00000001258

annotation not available (502 aa)

Predicted Functional Partners:

FXR2

0.977

CAPRIN1

0.939

FMR1

0.934

AGO2

0.875

CYFIP2

0.869

ENSODEP00000000693

0.854

ENSODEP00000019718

0.854

CYFIP1

0.849

NUFIP2

0.835

STAU1

0.822

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGO2	ENSODEP00000001258	ENSODEP00000019172	ENSODEP00000001258	Argonaute RISC catalytic component 2.	annotation not available	0.875
AGO2	FMR1	ENSODEP00000019172	ENSODEP00000011267	Argonaute RISC catalytic component 2.	FMRP translational regulator 1.	0.798
AGO2	FXR2	ENSODEP00000019172	ENSODEP00000024329	Argonaute RISC catalytic component 2.	FMR1 autosomal homolog 2.	0.869
AGO2	NUFIP2	ENSODEP00000019172	ENSODEP00000013077	Argonaute RISC catalytic component 2.	Nuclear FMR1 interacting protein 2.	0.481
AGO2	STAU1	ENSODEP00000019172	ENSODEP00000008726	Argonaute RISC catalytic component 2.	Staufen double-stranded RNA binding protein 1.	0.886
CAPRIN1	ENSODEP00000001258	ENSODEP00000022794	ENSODEP00000001258	Cell cycle associated protein 1.	annotation not available	0.939
CAPRIN1	FMR1	ENSODEP00000022794	ENSODEP00000011267	Cell cycle associated protein 1.	FMRP translational regulator 1.	0.947
CAPRIN1	FXR2	ENSODEP00000022794	ENSODEP00000024329	Cell cycle associated protein 1.	FMR1 autosomal homolog 2.	0.980
CAPRIN1	NUFIP2	ENSODEP00000022794	ENSODEP00000013077	Cell cycle associated protein 1.	Nuclear FMR1 interacting protein 2.	0.922
CAPRIN1	STAU1	ENSODEP00000022794	ENSODEP00000008726	Cell cycle associated protein 1.	Staufen double-stranded RNA binding protein 1.	0.926
CYFIP1	CYFIP2	ENSODEP00000007530	ENSODEP00000012432	Cytoplasmic FMR1 interacting protein 1.	Cytoplasmic FMR1 interacting protein 2.	0.999
CYFIP1	ENSODEP00000001258	ENSODEP00000007530	ENSODEP00000001258	Cytoplasmic FMR1 interacting protein 1.	annotation not available	0.849
CYFIP1	FMR1	ENSODEP00000007530	ENSODEP00000011267	Cytoplasmic FMR1 interacting protein 1.	FMRP translational regulator 1.	0.939
CYFIP1	FXR2	ENSODEP00000007530	ENSODEP00000024329	Cytoplasmic FMR1 interacting protein 1.	FMR1 autosomal homolog 2.	0.877
CYFIP1	NUFIP2	ENSODEP00000007530	ENSODEP00000013077	Cytoplasmic FMR1 interacting protein 1.	Nuclear FMR1 interacting protein 2.	0.543
CYFIP2	CYFIP1	ENSODEP00000012432	ENSODEP00000007530	Cytoplasmic FMR1 interacting protein 2.	Cytoplasmic FMR1 interacting protein 1.	0.999
CYFIP2	ENSODEP00000001258	ENSODEP00000012432	ENSODEP00000001258	Cytoplasmic FMR1 interacting protein 2.	annotation not available	0.869
CYFIP2	FMR1	ENSODEP00000012432	ENSODEP00000011267	Cytoplasmic FMR1 interacting protein 2.	FMRP translational regulator 1.	0.918
CYFIP2	FXR2	ENSODEP00000012432	ENSODEP00000024329	Cytoplasmic FMR1 interacting protein 2.	FMR1 autosomal homolog 2.	0.900
CYFIP2	NUFIP2	ENSODEP00000012432	ENSODEP00000013077	Cytoplasmic FMR1 interacting protein 2.	Nuclear FMR1 interacting protein 2.	0.546