ENSODEP00000001265 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001265

annotation not available (157 aa)

Predicted Functional Partners:

CHRD

0.776

PRCP

0.691

DPP7

0.691

MFRP

0.667

SDC1

0.662

ENSODEP00000020897

0.662

AMN

0.658

XPNPEP1

0.629

XPNPEP2

0.629

NRP1

0.610

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMN	CHRD	ENSODEP00000003167	ENSODEP00000018708	Amnion associated transmembrane protein.	Chordin.	0.450
AMN	ENSODEP00000001265	ENSODEP00000003167	ENSODEP00000001265	Amnion associated transmembrane protein.	annotation not available	0.658
AMN	MFRP	ENSODEP00000003167	ENSODEP00000009650	Amnion associated transmembrane protein.	Membrane frizzled-related protein.	0.926
AMN	NRP1	ENSODEP00000003167	ENSODEP00000005449	Amnion associated transmembrane protein.	Neuropilin 1.	0.914
CHRD	AMN	ENSODEP00000018708	ENSODEP00000003167	Chordin.	Amnion associated transmembrane protein.	0.450
CHRD	ENSODEP00000001265	ENSODEP00000018708	ENSODEP00000001265	Chordin.	annotation not available	0.776
DPP7	ENSODEP00000001265	ENSODEP00000019651	ENSODEP00000001265	Dipeptidyl peptidase 7.	annotation not available	0.691
DPP7	XPNPEP1	ENSODEP00000019651	ENSODEP00000010808	Dipeptidyl peptidase 7.	X-prolyl aminopeptidase 1.	0.883
DPP7	XPNPEP2	ENSODEP00000019651	ENSODEP00000015629	Dipeptidyl peptidase 7.	X-prolyl aminopeptidase 2.	0.883
ENSODEP00000001265	AMN	ENSODEP00000001265	ENSODEP00000003167	annotation not available	Amnion associated transmembrane protein.	0.658
ENSODEP00000001265	CHRD	ENSODEP00000001265	ENSODEP00000018708	annotation not available	Chordin.	0.776
ENSODEP00000001265	DPP7	ENSODEP00000001265	ENSODEP00000019651	annotation not available	Dipeptidyl peptidase 7.	0.691
ENSODEP00000001265	ENSODEP00000020897	ENSODEP00000001265	ENSODEP00000020897	annotation not available	annotation not available	0.662
ENSODEP00000001265	MFRP	ENSODEP00000001265	ENSODEP00000009650	annotation not available	Membrane frizzled-related protein.	0.667
ENSODEP00000001265	NRP1	ENSODEP00000001265	ENSODEP00000005449	annotation not available	Neuropilin 1.	0.610
ENSODEP00000001265	PRCP	ENSODEP00000001265	ENSODEP00000004989	annotation not available	Prolylcarboxypeptidase.	0.691
ENSODEP00000001265	SDC1	ENSODEP00000001265	ENSODEP00000014540	annotation not available	Syndecan 1.	0.662
ENSODEP00000001265	XPNPEP1	ENSODEP00000001265	ENSODEP00000010808	annotation not available	X-prolyl aminopeptidase 1.	0.629
ENSODEP00000001265	XPNPEP2	ENSODEP00000001265	ENSODEP00000015629	annotation not available	X-prolyl aminopeptidase 2.	0.629
ENSODEP00000020897	ENSODEP00000001265	ENSODEP00000020897	ENSODEP00000001265	annotation not available	annotation not available	0.662