Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHROOM3Shroom family member 3. (1755 aa)    
Predicted Functional Partners:
SORBS3
Sorbin and SH3 domain containing 3.
    
 
 0.890
ACTR8
Actin related protein 8.
    
 0.841
ACTR5
Actin related protein 5.
    
 0.835
RUVBL1
RuvB like AAA ATPase 1.
    
 0.828
DUSP11
Dual specificity phosphatase 11.
     
 0.815
INVS
Inversin.
    
 0.809
SORBS1
Sorbin and SH3 domain containing 1.
    
 
 0.764
FBXO45
F-box protein 45.
    
   0.763
Actl6a
annotation not available
   
 0.752
ENSODEP00000006911
annotation not available
   
 0.752
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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