RALYL protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

RALYL

RALY RNA binding protein like. (292 aa)

Predicted Functional Partners:

ENSODEP00000002778

0.934

ENSODEP00000000730

0.907

ENSODEP00000001477

0.907

ENSODEP00000002678

0.907

ENSODEP00000005698

0.907

ENSODEP00000010869

0.907

ENSODEP00000011746

0.907

ENSODEP00000017365

0.907

ENSODEP00000023452

0.907

ENSODEP00000023768

0.907

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000730	ENSODEP00000002778	ENSODEP00000000730	ENSODEP00000002778	annotation not available	annotation not available	0.801
ENSODEP00000000730	RALYL	ENSODEP00000000730	ENSODEP00000001276	annotation not available	RALY RNA binding protein like.	0.907
ENSODEP00000001477	ENSODEP00000002778	ENSODEP00000001477	ENSODEP00000002778	annotation not available	annotation not available	0.801
ENSODEP00000001477	RALYL	ENSODEP00000001477	ENSODEP00000001276	annotation not available	RALY RNA binding protein like.	0.907
ENSODEP00000002678	ENSODEP00000002778	ENSODEP00000002678	ENSODEP00000002778	annotation not available	annotation not available	0.801
ENSODEP00000002678	RALYL	ENSODEP00000002678	ENSODEP00000001276	annotation not available	RALY RNA binding protein like.	0.907
ENSODEP00000002778	ENSODEP00000000730	ENSODEP00000002778	ENSODEP00000000730	annotation not available	annotation not available	0.801
ENSODEP00000002778	ENSODEP00000001477	ENSODEP00000002778	ENSODEP00000001477	annotation not available	annotation not available	0.801
ENSODEP00000002778	ENSODEP00000002678	ENSODEP00000002778	ENSODEP00000002678	annotation not available	annotation not available	0.801
ENSODEP00000002778	ENSODEP00000005698	ENSODEP00000002778	ENSODEP00000005698	annotation not available	annotation not available	0.801
ENSODEP00000002778	ENSODEP00000010869	ENSODEP00000002778	ENSODEP00000010869	annotation not available	annotation not available	0.801
ENSODEP00000002778	ENSODEP00000011746	ENSODEP00000002778	ENSODEP00000011746	annotation not available	annotation not available	0.801
ENSODEP00000002778	ENSODEP00000017365	ENSODEP00000002778	ENSODEP00000017365	annotation not available	annotation not available	0.801
ENSODEP00000002778	ENSODEP00000023452	ENSODEP00000002778	ENSODEP00000023452	annotation not available	annotation not available	0.801
ENSODEP00000002778	ENSODEP00000023768	ENSODEP00000002778	ENSODEP00000023768	annotation not available	annotation not available	0.801
ENSODEP00000002778	RALYL	ENSODEP00000002778	ENSODEP00000001276	annotation not available	RALY RNA binding protein like.	0.934
ENSODEP00000005698	ENSODEP00000002778	ENSODEP00000005698	ENSODEP00000002778	annotation not available	annotation not available	0.801
ENSODEP00000005698	RALYL	ENSODEP00000005698	ENSODEP00000001276	annotation not available	RALY RNA binding protein like.	0.907
ENSODEP00000010869	ENSODEP00000002778	ENSODEP00000010869	ENSODEP00000002778	annotation not available	annotation not available	0.801
ENSODEP00000010869	RALYL	ENSODEP00000010869	ENSODEP00000001276	annotation not available	RALY RNA binding protein like.	0.907