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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHKBP1SH3KBP1 binding protein 1. (711 aa)    
Predicted Functional Partners:
KCTD3
Potassium channel tetramerization domain containing 3.
  
 
  
0.836
SH3KBP1
SH3 domain containing kinase binding protein 1.
    
 
 0.751
LRRC40
Leucine rich repeat containing 40.
    
   0.711
SNX27
Sorting nexin 27.
    
   0.684
KCTD19
Potassium channel tetramerization domain containing 19.
    
 
 0.655
GLTP
Glycolipid transfer protein.
    
   0.622
KCTD7
Potassium channel tetramerization domain containing 7.
    
 
0.610
KCTD11
Potassium channel tetramerization domain containing 11.
    
 
 0.608
CUL3
Cullin 3.
    
 0.567
KCTD21
Potassium channel tetramerization domain containing 21.
    
 
0.544
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.