TRIM28 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TRIM28

Tripartite motif containing 28. (841 aa)

Predicted Functional Partners:

ENSODEP00000010427

0.991

SETDB1

0.991

ENSODEP00000001089

0.986

ZNF354C

0.983

ENSODEP00000014010

0.982

Cbx5

0.982

SMARCAD1

0.980

ENSODEP00000000633

0.979

KDM1A

0.979

ENSODEP00000023580

0.979

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cbx5	ENSODEP00000000633	ENSODEP00000017932	ENSODEP00000000633	annotation not available	annotation not available	0.910
Cbx5	ENSODEP00000023580	ENSODEP00000017932	ENSODEP00000023580	annotation not available	annotation not available	0.910
Cbx5	KDM1A	ENSODEP00000017932	ENSODEP00000019995	annotation not available	Lysine demethylase 1A.	0.660
Cbx5	SETDB1	ENSODEP00000017932	ENSODEP00000016917	annotation not available	SET domain bifurcated histone lysine methyltransferase 1.	0.811
Cbx5	TRIM28	ENSODEP00000017932	ENSODEP00000001289	annotation not available	Tripartite motif containing 28.	0.982
ENSODEP00000000633	Cbx5	ENSODEP00000000633	ENSODEP00000017932	annotation not available	annotation not available	0.910
ENSODEP00000000633	ENSODEP00000014010	ENSODEP00000000633	ENSODEP00000014010	annotation not available	annotation not available	0.910
ENSODEP00000000633	KDM1A	ENSODEP00000000633	ENSODEP00000019995	annotation not available	Lysine demethylase 1A.	0.660
ENSODEP00000000633	SETDB1	ENSODEP00000000633	ENSODEP00000016917	annotation not available	SET domain bifurcated histone lysine methyltransferase 1.	0.814
ENSODEP00000000633	TRIM28	ENSODEP00000000633	ENSODEP00000001289	annotation not available	Tripartite motif containing 28.	0.979
ENSODEP00000001089	KDM1A	ENSODEP00000001089	ENSODEP00000019995	annotation not available	Lysine demethylase 1A.	0.412
ENSODEP00000001089	SETDB1	ENSODEP00000001089	ENSODEP00000016917	annotation not available	SET domain bifurcated histone lysine methyltransferase 1.	0.679
ENSODEP00000001089	TRIM28	ENSODEP00000001089	ENSODEP00000001289	annotation not available	Tripartite motif containing 28.	0.986
ENSODEP00000010427	SETDB1	ENSODEP00000010427	ENSODEP00000016917	annotation not available	SET domain bifurcated histone lysine methyltransferase 1.	0.583
ENSODEP00000010427	TRIM28	ENSODEP00000010427	ENSODEP00000001289	annotation not available	Tripartite motif containing 28.	0.991
ENSODEP00000014010	ENSODEP00000000633	ENSODEP00000014010	ENSODEP00000000633	annotation not available	annotation not available	0.910
ENSODEP00000014010	ENSODEP00000023580	ENSODEP00000014010	ENSODEP00000023580	annotation not available	annotation not available	0.910
ENSODEP00000014010	KDM1A	ENSODEP00000014010	ENSODEP00000019995	annotation not available	Lysine demethylase 1A.	0.660
ENSODEP00000014010	SETDB1	ENSODEP00000014010	ENSODEP00000016917	annotation not available	SET domain bifurcated histone lysine methyltransferase 1.	0.811
ENSODEP00000014010	TRIM28	ENSODEP00000014010	ENSODEP00000001289	annotation not available	Tripartite motif containing 28.	0.982