STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM28Tripartite motif containing 28. (841 aa)    
Predicted Functional Partners:
ENSODEP00000010427
annotation not available
    
 0.982
SMARCAD1
annotation not available
   
 
 0.980
ENSODEP00000014010
annotation not available
    
 0.959
Cbx5
annotation not available
    
 0.959
ENSODEP00000001089
annotation not available
    
 0.958
SMAD4
SMAD family member 4.
   
 0.956
ENSODEP00000000633
annotation not available
    
 0.951
ENSODEP00000023580
annotation not available
    
 0.951
TRIM24
Tripartite motif containing 24.
    
 
0.949
ZNF354C
Zinc finger protein 354C.
    
 0.932
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.