STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC50Coiled-coil domain containing 50. (300 aa)    
Predicted Functional Partners:
IFIH1
Interferon induced with helicase C domain 1.
    
 
 0.828
ENSODEP00000026177
annotation not available
    
   0.776
ENSODEP00000026556
annotation not available
    
   0.776
NCAPH
non-SMC condensin I complex subunit H.
    
   0.722
ENSODEP00000004861
annotation not available
    
 
 0.646
ENSODEP00000012762
annotation not available
    
 
 0.646
ENSODEP00000014293
annotation not available
    
 
 0.646
ENSODEP00000025933
annotation not available
    
 
 0.646
DDX58
DExD/H-box helicase 58.
    
 
 0.628
DHX58
DExH-box helicase 58.
    
 
 0.622
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.