ODF1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ODF1

Outer dense fiber of sperm tails 1. (253 aa)

Predicted Functional Partners:

SPAG4

0.887

PDCL

0.830

TNP1

0.812

AVPR2

0.803

ENSODEP00000024500

0.774

SYT13

0.756

AKAP3

0.738

SPATA20

0.736

ENSODEP00000023608

0.731

ENSODEP00000000199

0.728

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKAP3	ENSODEP00000023608	ENSODEP00000004175	ENSODEP00000023608	A-kinase anchoring protein 3.	annotation not available	0.621
AKAP3	ENSODEP00000024500	ENSODEP00000004175	ENSODEP00000024500	A-kinase anchoring protein 3.	annotation not available	0.465
AKAP3	ODF1	ENSODEP00000004175	ENSODEP00000001303	A-kinase anchoring protein 3.	Outer dense fiber of sperm tails 1.	0.738
AKAP3	TNP1	ENSODEP00000004175	ENSODEP00000015672	A-kinase anchoring protein 3.	Transition protein 1.	0.802
AVPR2	ODF1	ENSODEP00000006929	ENSODEP00000001303	Arginine vasopressin receptor 2.	Outer dense fiber of sperm tails 1.	0.803
ENSODEP00000000199	ODF1	ENSODEP00000000199	ENSODEP00000001303	annotation not available	Outer dense fiber of sperm tails 1.	0.728
ENSODEP00000000199	PDCL	ENSODEP00000000199	ENSODEP00000007958	annotation not available	Phosducin like.	0.952
ENSODEP00000023608	AKAP3	ENSODEP00000023608	ENSODEP00000004175	annotation not available	A-kinase anchoring protein 3.	0.621
ENSODEP00000023608	ENSODEP00000024500	ENSODEP00000023608	ENSODEP00000024500	annotation not available	annotation not available	0.600
ENSODEP00000023608	ODF1	ENSODEP00000023608	ENSODEP00000001303	annotation not available	Outer dense fiber of sperm tails 1.	0.731
ENSODEP00000024500	AKAP3	ENSODEP00000024500	ENSODEP00000004175	annotation not available	A-kinase anchoring protein 3.	0.465
ENSODEP00000024500	ENSODEP00000023608	ENSODEP00000024500	ENSODEP00000023608	annotation not available	annotation not available	0.600
ENSODEP00000024500	ODF1	ENSODEP00000024500	ENSODEP00000001303	annotation not available	Outer dense fiber of sperm tails 1.	0.774
ODF1	AKAP3	ENSODEP00000001303	ENSODEP00000004175	Outer dense fiber of sperm tails 1.	A-kinase anchoring protein 3.	0.738
ODF1	AVPR2	ENSODEP00000001303	ENSODEP00000006929	Outer dense fiber of sperm tails 1.	Arginine vasopressin receptor 2.	0.803
ODF1	ENSODEP00000000199	ENSODEP00000001303	ENSODEP00000000199	Outer dense fiber of sperm tails 1.	annotation not available	0.728
ODF1	ENSODEP00000023608	ENSODEP00000001303	ENSODEP00000023608	Outer dense fiber of sperm tails 1.	annotation not available	0.731
ODF1	ENSODEP00000024500	ENSODEP00000001303	ENSODEP00000024500	Outer dense fiber of sperm tails 1.	annotation not available	0.774
ODF1	PDCL	ENSODEP00000001303	ENSODEP00000007958	Outer dense fiber of sperm tails 1.	Phosducin like.	0.830
ODF1	SPAG4	ENSODEP00000001303	ENSODEP00000018635	Outer dense fiber of sperm tails 1.	Sperm associated antigen 4.	0.887