STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKIB1Ankyrin repeat and IBR domain containing 1. (809 aa)    
Predicted Functional Partners:
RNF216
Ring finger protein 216.
    
 0.893
TNF
Tumor necrosis factor.
    
 0.849
CUL3
Cullin 3.
   
 0.841
CUL1
Cullin 1.
   
 0.841
CACUL1
CDK2 associated cullin domain 1.
   
 0.841
OTULIN
OTU deubiquitinase with linear linkage specificity.
    
 0.830
ENSODEP00000001740
annotation not available
    
 0.830
ENSODEP00000003100
annotation not available
    
 0.830
ENSODEP00000003859
annotation not available
    
 0.822
IRF9
Interferon regulatory factor 9.
    
 0.822
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.