ZNF711 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ZNF711

Zinc finger protein 711. (806 aa)

Predicted Functional Partners:

PHF8

0.877

BRD3

0.817

ENSODEP00000025351

0.783

PHF2

0.697

KDM7A

0.697

POLA1

0.696

MYSM1

0.693

NME8

0.692

ATRX

0.686

GART

0.675

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATRX	BRD3	ENSODEP00000001347	ENSODEP00000022271	ATRX chromatin remodeler.	Bromodomain containing 3.	0.760
ATRX	MYSM1	ENSODEP00000001347	ENSODEP00000015759	ATRX chromatin remodeler.	Myb like, SWIRM and MPN domains 1.	0.852
ATRX	POLA1	ENSODEP00000001347	ENSODEP00000017654	ATRX chromatin remodeler.	DNA polymerase alpha 1, catalytic subunit.	0.548
ATRX	ZNF711	ENSODEP00000001347	ENSODEP00000001322	ATRX chromatin remodeler.	Zinc finger protein 711.	0.686
BRD3	ATRX	ENSODEP00000022271	ENSODEP00000001347	Bromodomain containing 3.	ATRX chromatin remodeler.	0.760
BRD3	KDM7A	ENSODEP00000022271	ENSODEP00000018572	Bromodomain containing 3.	Lysine demethylase 7A.	0.447
BRD3	MYSM1	ENSODEP00000022271	ENSODEP00000015759	Bromodomain containing 3.	Myb like, SWIRM and MPN domains 1.	0.667
BRD3	PHF2	ENSODEP00000022271	ENSODEP00000014438	Bromodomain containing 3.	PHD finger protein 2.	0.485
BRD3	PHF8	ENSODEP00000022271	ENSODEP00000000612	Bromodomain containing 3.	PHD finger protein 8.	0.447
BRD3	ZNF711	ENSODEP00000022271	ENSODEP00000001322	Bromodomain containing 3.	Zinc finger protein 711.	0.817
ENSODEP00000025351	GART	ENSODEP00000025351	ENSODEP00000004873	annotation not available	annotation not available	0.406
ENSODEP00000025351	NME8	ENSODEP00000025351	ENSODEP00000010810	annotation not available	NME/NM23 family member 8.	0.765
ENSODEP00000025351	ZNF711	ENSODEP00000025351	ENSODEP00000001322	annotation not available	Zinc finger protein 711.	0.783
GART	ENSODEP00000025351	ENSODEP00000004873	ENSODEP00000025351	annotation not available	annotation not available	0.406
GART	MYSM1	ENSODEP00000004873	ENSODEP00000015759	annotation not available	Myb like, SWIRM and MPN domains 1.	0.723
GART	NME8	ENSODEP00000004873	ENSODEP00000010810	annotation not available	NME/NM23 family member 8.	0.757
GART	ZNF711	ENSODEP00000004873	ENSODEP00000001322	annotation not available	Zinc finger protein 711.	0.675
KDM7A	BRD3	ENSODEP00000018572	ENSODEP00000022271	Lysine demethylase 7A.	Bromodomain containing 3.	0.447
KDM7A	MYSM1	ENSODEP00000018572	ENSODEP00000015759	Lysine demethylase 7A.	Myb like, SWIRM and MPN domains 1.	0.426
KDM7A	PHF2	ENSODEP00000018572	ENSODEP00000014438	Lysine demethylase 7A.	PHD finger protein 2.	0.827