Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHD8Chromodomain helicase DNA binding protein 8. (2425 aa)    
Predicted Functional Partners:
ENSODEP00000012766
annotation not available
   
 0.984
ENSODEP00000015502
annotation not available
   
 0.984
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.980
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 
 0.970
CHD7
Chromodomain helicase DNA binding protein 7.
   
 
 0.969
BRD4
Bromodomain containing 4.
   
 
 0.956
SETD2
SET domain containing 2, histone lysine methyltransferase.
  
 0.923
ADNP
Activity dependent neuroprotector homeobox.
   
 
 0.911
ENSODEP00000021195
annotation not available
    
 0.910
WDR5B
WD repeat domain 5B.
    
 0.910
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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