BBS12 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BBS12

Bardet-Biedl syndrome 12. (704 aa)

Predicted Functional Partners:

MKKS

0.996

BBS10

0.992

BBS7

0.989

ENSODEP00000010439

0.923

ENSODEP00000024107

0.915

BBS2

0.914

ENSODEP00000010730

0.902

ENSODEP00000011257

0.902

ENSODEP00000016835

0.902

ENSODEP00000025065

0.902

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS10	BBS12	ENSODEP00000009862	ENSODEP00000001328	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 12.	0.992
BBS10	BBS2	ENSODEP00000009862	ENSODEP00000023725	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 2.	0.906
BBS10	BBS7	ENSODEP00000009862	ENSODEP00000002292	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 7.	0.976
BBS10	ENSODEP00000010439	ENSODEP00000009862	ENSODEP00000010439	Bardet-Biedl syndrome 10.	annotation not available	0.923
BBS10	ENSODEP00000010730	ENSODEP00000009862	ENSODEP00000010730	Bardet-Biedl syndrome 10.	annotation not available	0.767
BBS10	ENSODEP00000011257	ENSODEP00000009862	ENSODEP00000011257	Bardet-Biedl syndrome 10.	annotation not available	0.767
BBS10	ENSODEP00000016835	ENSODEP00000009862	ENSODEP00000016835	Bardet-Biedl syndrome 10.	annotation not available	0.767
BBS10	ENSODEP00000024107	ENSODEP00000009862	ENSODEP00000024107	Bardet-Biedl syndrome 10.	annotation not available	0.904
BBS10	ENSODEP00000025065	ENSODEP00000009862	ENSODEP00000025065	Bardet-Biedl syndrome 10.	annotation not available	0.767
BBS10	MKKS	ENSODEP00000009862	ENSODEP00000007350	Bardet-Biedl syndrome 10.	McKusick-Kaufman syndrome.	0.989
BBS12	BBS10	ENSODEP00000001328	ENSODEP00000009862	Bardet-Biedl syndrome 12.	Bardet-Biedl syndrome 10.	0.992
BBS12	BBS2	ENSODEP00000001328	ENSODEP00000023725	Bardet-Biedl syndrome 12.	Bardet-Biedl syndrome 2.	0.914
BBS12	BBS7	ENSODEP00000001328	ENSODEP00000002292	Bardet-Biedl syndrome 12.	Bardet-Biedl syndrome 7.	0.989
BBS12	ENSODEP00000010439	ENSODEP00000001328	ENSODEP00000010439	Bardet-Biedl syndrome 12.	annotation not available	0.923
BBS12	ENSODEP00000010730	ENSODEP00000001328	ENSODEP00000010730	Bardet-Biedl syndrome 12.	annotation not available	0.902
BBS12	ENSODEP00000011257	ENSODEP00000001328	ENSODEP00000011257	Bardet-Biedl syndrome 12.	annotation not available	0.902
BBS12	ENSODEP00000016835	ENSODEP00000001328	ENSODEP00000016835	Bardet-Biedl syndrome 12.	annotation not available	0.902
BBS12	ENSODEP00000024107	ENSODEP00000001328	ENSODEP00000024107	Bardet-Biedl syndrome 12.	annotation not available	0.915
BBS12	ENSODEP00000025065	ENSODEP00000001328	ENSODEP00000025065	Bardet-Biedl syndrome 12.	annotation not available	0.902
BBS12	MKKS	ENSODEP00000001328	ENSODEP00000007350	Bardet-Biedl syndrome 12.	McKusick-Kaufman syndrome.	0.996