GTPBP6 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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[Homology]

Score

GTPBP6

GTP binding protein 6 (putative). (490 aa)

Predicted Functional Partners:

MALSU1

0.914

MRPL9

0.903

MRPL58

0.884

YME1L1

0.883

MRPL27

0.872

MRPL32

0.863

MRPL13

0.861

MRPL40

0.861

MRPL21

0.860

AFG3L2

0.854

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFG3L2	GTPBP6	ENSODEP00000000538	ENSODEP00000001329	AFG3 like matrix AAA peptidase subunit 2.	GTP binding protein 6 (putative).	0.854
AFG3L2	MRPL13	ENSODEP00000000538	ENSODEP00000002508	AFG3 like matrix AAA peptidase subunit 2.	Mitochondrial ribosomal protein L13.	0.869
AFG3L2	MRPL21	ENSODEP00000000538	ENSODEP00000023726	AFG3 like matrix AAA peptidase subunit 2.	Mitochondrial ribosomal protein L21.	0.832
AFG3L2	MRPL27	ENSODEP00000000538	ENSODEP00000022792	AFG3 like matrix AAA peptidase subunit 2.	Mitochondrial ribosomal protein L27.	0.836
AFG3L2	MRPL32	ENSODEP00000000538	ENSODEP00000011656	AFG3 like matrix AAA peptidase subunit 2.	Mitochondrial ribosomal protein L32.	0.932
AFG3L2	MRPL40	ENSODEP00000000538	ENSODEP00000023254	AFG3 like matrix AAA peptidase subunit 2.	Mitochondrial ribosomal protein L40.	0.592
AFG3L2	MRPL58	ENSODEP00000000538	ENSODEP00000013792	AFG3 like matrix AAA peptidase subunit 2.	Mitochondrial ribosomal protein L58.	0.589
AFG3L2	MRPL9	ENSODEP00000000538	ENSODEP00000014836	AFG3 like matrix AAA peptidase subunit 2.	Mitochondrial ribosomal protein L9.	0.844
AFG3L2	YME1L1	ENSODEP00000000538	ENSODEP00000003471	AFG3 like matrix AAA peptidase subunit 2.	YME1 like 1 ATPase.	0.928
GTPBP6	AFG3L2	ENSODEP00000001329	ENSODEP00000000538	GTP binding protein 6 (putative).	AFG3 like matrix AAA peptidase subunit 2.	0.854
GTPBP6	MALSU1	ENSODEP00000001329	ENSODEP00000011025	GTP binding protein 6 (putative).	Mitochondrial assembly of ribosomal large subunit 1.	0.914
GTPBP6	MRPL13	ENSODEP00000001329	ENSODEP00000002508	GTP binding protein 6 (putative).	Mitochondrial ribosomal protein L13.	0.861
GTPBP6	MRPL21	ENSODEP00000001329	ENSODEP00000023726	GTP binding protein 6 (putative).	Mitochondrial ribosomal protein L21.	0.860
GTPBP6	MRPL27	ENSODEP00000001329	ENSODEP00000022792	GTP binding protein 6 (putative).	Mitochondrial ribosomal protein L27.	0.872
GTPBP6	MRPL32	ENSODEP00000001329	ENSODEP00000011656	GTP binding protein 6 (putative).	Mitochondrial ribosomal protein L32.	0.863
GTPBP6	MRPL40	ENSODEP00000001329	ENSODEP00000023254	GTP binding protein 6 (putative).	Mitochondrial ribosomal protein L40.	0.861
GTPBP6	MRPL58	ENSODEP00000001329	ENSODEP00000013792	GTP binding protein 6 (putative).	Mitochondrial ribosomal protein L58.	0.884
GTPBP6	MRPL9	ENSODEP00000001329	ENSODEP00000014836	GTP binding protein 6 (putative).	Mitochondrial ribosomal protein L9.	0.903
GTPBP6	YME1L1	ENSODEP00000001329	ENSODEP00000003471	GTP binding protein 6 (putative).	YME1 like 1 ATPase.	0.883
MALSU1	GTPBP6	ENSODEP00000011025	ENSODEP00000001329	Mitochondrial assembly of ribosomal large subunit 1.	GTP binding protein 6 (putative).	0.914