STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATRXATRX chromatin remodeler. (2444 aa)    
Predicted Functional Partners:
DAXX
Death domain associated protein.
    
 0.999
RAD51
RAD51 recombinase.
   
 
 0.991
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 
 0.969
MECP2
methyl-CpG binding protein 2.
    
 0.962
BRD4
Bromodomain containing 4.
   
 
 0.960
Smc5
annotation not available
  
 
 0.959
ENSODEP00000018834
annotation not available
    
 0.959
MRE11
MRE11 homolog, double strand break repair nuclease.
  
 
 0.952
ENSODEP00000015307
annotation not available
    
 
 0.949
ENSODEP00000018031
annotation not available
    
 0.947
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.