Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS50VPS50 subunit of EARP/GARPII complex. (588 aa)    
Predicted Functional Partners:
VPS51
VPS51 subunit of GARP complex.
    
 0.990
VPS52
VPS52 subunit of GARP complex.
   
 0.987
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 0.986
VPS53
VPS53 subunit of GARP complex.
   
 
 0.981
VPS54
VPS54 subunit of GARP complex.
    
 
 0.980
SNAP29
Synaptosome associated protein 29.
    
 
 0.908
STX6
Syntaxin 6.
    
 
 0.723
ENSODEP00000007003
annotation not available
    
   0.720
ENSODEP00000008001
annotation not available
    
   0.720
HEPACAM2
HEPACAM family member 2.
      
 0.692
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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