Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM13CFamily with sequence similarity 13 member C. (578 aa)    
Predicted Functional Partners:
AHCYL1
Adenosylhomocysteinase like 1.
    
   0.904
DDX46
DEAD-box helicase 46.
    
 
 0.876
RDH14
Retinol dehydrogenase 14.
      
 0.800
ENSODEP00000017532
annotation not available
    
   0.766
AHCYL2
Adenosylhomocysteinase like 2.
    
   0.766
PPP2R3A
Protein phosphatase 2 regulatory subunit B''alpha.
      
 0.757
KIF2A
Kinesin family member 2A.
    
 
 0.705
UMODL1
Uromodulin like 1.
    
 
 0.704
ARL5B
ADP ribosylation factor like GTPase 5B.
    
 0.685
PDZRN3
PDZ domain containing ring finger 3.
    
 
 0.624
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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