LIPH protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

LIPH

Lipase H. (451 aa)

Predicted Functional Partners:

DHX32

0.798

LPAR6

0.767

DGAT2

0.712

MOGAT2

0.712

ENSODEP00000017160

0.690

POU2F3

0.686

AGK

0.663

LPAR3

0.661

NADK

0.652

ENSODEP00000017643

0.652

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGK	DGAT2	ENSODEP00000021017	ENSODEP00000005700	Acylglycerol kinase.	Diacylglycerol O-acyltransferase 2.	0.870
AGK	LIPH	ENSODEP00000021017	ENSODEP00000001372	Acylglycerol kinase.	Lipase H.	0.663
AGK	MOGAT2	ENSODEP00000021017	ENSODEP00000005709	Acylglycerol kinase.	Monoacylglycerol O-acyltransferase 2.	0.960
DGAT2	AGK	ENSODEP00000005700	ENSODEP00000021017	Diacylglycerol O-acyltransferase 2.	Acylglycerol kinase.	0.870
DGAT2	LIPH	ENSODEP00000005700	ENSODEP00000001372	Diacylglycerol O-acyltransferase 2.	Lipase H.	0.712
DGAT2	MOGAT2	ENSODEP00000005700	ENSODEP00000005709	Diacylglycerol O-acyltransferase 2.	Monoacylglycerol O-acyltransferase 2.	0.965
DHX32	LIPH	ENSODEP00000023633	ENSODEP00000001372	DEAH-box helicase 32 (putative).	Lipase H.	0.798
ENSODEP00000017160	LIPH	ENSODEP00000017160	ENSODEP00000001372	annotation not available	Lipase H.	0.690
ENSODEP00000017643	LIPH	ENSODEP00000017643	ENSODEP00000001372	annotation not available	Lipase H.	0.652
LIPH	AGK	ENSODEP00000001372	ENSODEP00000021017	Lipase H.	Acylglycerol kinase.	0.663
LIPH	DGAT2	ENSODEP00000001372	ENSODEP00000005700	Lipase H.	Diacylglycerol O-acyltransferase 2.	0.712
LIPH	DHX32	ENSODEP00000001372	ENSODEP00000023633	Lipase H.	DEAH-box helicase 32 (putative).	0.798
LIPH	ENSODEP00000017160	ENSODEP00000001372	ENSODEP00000017160	Lipase H.	annotation not available	0.690
LIPH	ENSODEP00000017643	ENSODEP00000001372	ENSODEP00000017643	Lipase H.	annotation not available	0.652
LIPH	LPAR3	ENSODEP00000001372	ENSODEP00000006244	Lipase H.	Lysophosphatidic acid receptor 3.	0.661
LIPH	LPAR6	ENSODEP00000001372	ENSODEP00000026156	Lipase H.	Lysophosphatidic acid receptor 6.	0.767
LIPH	MOGAT2	ENSODEP00000001372	ENSODEP00000005709	Lipase H.	Monoacylglycerol O-acyltransferase 2.	0.712
LIPH	NADK	ENSODEP00000001372	ENSODEP00000013425	Lipase H.	NAD kinase.	0.652
LIPH	POU2F3	ENSODEP00000001372	ENSODEP00000009216	Lipase H.	POU class 2 homeobox 3.	0.686
LPAR3	LIPH	ENSODEP00000006244	ENSODEP00000001372	Lysophosphatidic acid receptor 3.	Lipase H.	0.661