STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001388annotation not available (360 aa)    
Predicted Functional Partners:
ATG2A
Autophagy related 2A.
    
 0.999
ATG2B
Autophagy related 2B.
    
 0.998
ATG16L1
Autophagy related 16 like 1.
     
 0.977
ATG16L2
Autophagy related 16 like 2.
     
 0.976
WIPI1
WD repeat domain, phosphoinositide interacting 1.
   
 0.975
WIPI2
WD repeat domain, phosphoinositide interacting 2.
   
 0.937
LHX6
LIM homeobox 6.
    
   0.908
WDR45B
WD repeat domain 45B.
     
  0.864
ATG7
Autophagy related 7.
    
 
 0.813
ENSODEP00000024578
annotation not available
    
 
 0.796
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.