ENSODEP00000001393 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSODEP00000001393

annotation not available (1101 aa)

Predicted Functional Partners:

POLA1

0.985

MCM2

0.983

MCM4

0.982

MCM5

0.980

ENSODEP00000020563

0.975

PRIM2

0.974

TIMELESS

0.970

CDC45

0.970

ENSODEP00000023297

0.970

POLE

0.967

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC45	ENSODEP00000001393	ENSODEP00000022698	ENSODEP00000001393	Cell division cycle 45.	annotation not available	0.970
CDC45	ENSODEP00000020563	ENSODEP00000022698	ENSODEP00000020563	Cell division cycle 45.	annotation not available	0.954
CDC45	ENSODEP00000023297	ENSODEP00000022698	ENSODEP00000023297	Cell division cycle 45.	annotation not available	0.998
CDC45	MCM2	ENSODEP00000022698	ENSODEP00000005225	Cell division cycle 45.	Minichromosome maintenance complex component 2.	0.999
CDC45	MCM4	ENSODEP00000022698	ENSODEP00000006175	Cell division cycle 45.	Minichromosome maintenance complex component 4.	0.999
CDC45	MCM5	ENSODEP00000022698	ENSODEP00000007934	Cell division cycle 45.	Minichromosome maintenance complex component 5.	0.999
CDC45	POLA1	ENSODEP00000022698	ENSODEP00000017654	Cell division cycle 45.	DNA polymerase alpha 1, catalytic subunit.	0.996
CDC45	POLE	ENSODEP00000022698	ENSODEP00000013030	Cell division cycle 45.	DNA polymerase epsilon, catalytic subunit.	0.990
CDC45	PRIM2	ENSODEP00000022698	ENSODEP00000021654	Cell division cycle 45.	DNA primase subunit 2.	0.992
CDC45	TIMELESS	ENSODEP00000022698	ENSODEP00000008960	Cell division cycle 45.	Timeless circadian regulator.	0.978
ENSODEP00000001393	CDC45	ENSODEP00000001393	ENSODEP00000022698	annotation not available	Cell division cycle 45.	0.970
ENSODEP00000001393	ENSODEP00000020563	ENSODEP00000001393	ENSODEP00000020563	annotation not available	annotation not available	0.975
ENSODEP00000001393	ENSODEP00000023297	ENSODEP00000001393	ENSODEP00000023297	annotation not available	annotation not available	0.970
ENSODEP00000001393	MCM2	ENSODEP00000001393	ENSODEP00000005225	annotation not available	Minichromosome maintenance complex component 2.	0.983
ENSODEP00000001393	MCM4	ENSODEP00000001393	ENSODEP00000006175	annotation not available	Minichromosome maintenance complex component 4.	0.982
ENSODEP00000001393	MCM5	ENSODEP00000001393	ENSODEP00000007934	annotation not available	Minichromosome maintenance complex component 5.	0.980
ENSODEP00000001393	POLA1	ENSODEP00000001393	ENSODEP00000017654	annotation not available	DNA polymerase alpha 1, catalytic subunit.	0.985
ENSODEP00000001393	POLE	ENSODEP00000001393	ENSODEP00000013030	annotation not available	DNA polymerase epsilon, catalytic subunit.	0.967
ENSODEP00000001393	PRIM2	ENSODEP00000001393	ENSODEP00000021654	annotation not available	DNA primase subunit 2.	0.974
ENSODEP00000001393	TIMELESS	ENSODEP00000001393	ENSODEP00000008960	annotation not available	Timeless circadian regulator.	0.970